Carassius gibelio (silver crucian carp): 127948486
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Entry
127948486 CDS
T08819
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127948486
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
127948486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
127948486
NCBI-ProteinID:
XP_052400901
LinkDB
All DBs
Position
B1:19077410..19097339
Genome browser
AA seq
1773 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSSTTPPSRRPSVFERLGPSTPSNAAETHCRNWLKTGNCSY
GNTCRYTHGTPSRGKGSSGTFNRSAERPSGDLRERMKSKRQDVDGDTQKRDTDEHTSPTT
RQRDSSRGRHREKEDIKITKERTPASEEESADWEASREDSDNGDYDYELSLEIKRRKIQR
ELMKLEQENMDKREEIVIKKGGPVPKSRTSNTSKGRVSPERSSSKGSPSSRKSSSPKRKA
GKVGSSSKKEKKSSTSSVISSPVSDQTRAEEKDSRSSKSGHGKRKGPQTPSPPPPVPVEN
PVTGKKHKNKHKNKEKCEDKPKEGKERGRDTEKHKEKKEKRRDRSDSSHKAKRSVTSEER
SGSLSPPLREPSPPARRRLSSPKPTSQKQSSQQRSKTPPRHCRSPSPPSRQHHSPSSRSG
SSAQRHSPSPPHRQGSVSPLYHGLPPPSSSSPPPTQSSRCSRSPLTPQRDPSPTPAPRRS
SPSPSPSARHRSQGRERERGRSERDKSPALQERRHERRDESRGKREKDSSRDERDYEVEQ
SSSRDDRDAKDGRDRRIERDRRDVREERQHRGELKDTRDTRAGETRDRSGRESLEHRERD
RDRDRERERERERSETHRKEEMTPQEERNYGRGHGREELRNDSRVDNRNESRAERTGRGR
GRGDATVKGSARAGRASQADTCSASGHDSWESRSSGLRERSSERNTDRDRYNNDRPRGEQ
PRDERRGGHAERDRRDYREREQRAPSPVRQQNRSEHLDREERRDDRRSDRADDRRDDRTR
EREKDREREREKEREREREKEREREAERERERVREREQEREREREREREREERERERERE
REREEREREREEQEKERERERKEREREREQRERERQREWDEREKEREERRKKKDDSRDDR
SARDAHEERKNTRKRRAENTPSPRPSPKRGRDVSPADSDSYNRTEEKGDKHRLLSQVVRP
QETVRSPVRSPVRSPVRSPARSFTDDKHKRWKDEDKKESRGRNEEVDSRGERATGRGTER
HGEHTPDISATGISESRRGKEQRDIPTAALTPPPLSVDSLLAVHEEGKKKTKSQKKILKK
NRKEEESGGGDRSNPEPPSSSSIAEAPQALLSPRKTAKKKVLERKRKRSQGPESDVSEDE
LVAQHPLTKRRRGPRTPPPVSKEDLPSQRALTAGQSSLSAKIDANFSDWSDEDVPERGET
SSASLQSNRPPERLLPSERAPRRGARGGGRDRSDPPIAPLLPDPPMLIQSLPLQPLLPQH
MLRKPQQADMQQRSNQSRAPSRRLRSPSNETAHRDEGPQGLRTRRGLMQGGNIRERERER
ERDREWERERERERDRAVASEQMGGERMSRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSP
ESERQARSRAGSYESRERDRERDRDQLDREREKKDPRLMQNQQAPQRDWDLEPREWGGRG
REPLLRGNREPVRERDLREMRERERPLPEGLLAHERMDRERGERDRERERMLLFDPQAHR
EPKSRSETKMERGEYVPLLPREALMDVEKPTDNSQLQGEASEPKMDSLDEEEDGKGDDAQ
SAVSGGEEYEPISDDELDEILADSQKRDEQQDDEKISGPLDVIDVDWSSLMPKQKQEPRT
PGAALLRFTPGAVLLRAGVSRRLAGPQLLARVKEVCSRELEDPKDADKLLEHDLGALNMA
AYNRRMERANLLRSLGPCCKALCARRDIAVRRQLLKNDKGTTKQIYTSTPVVDNELMQCS
LRLFKKKLASSLSSGQKTDAAQHLSTPAELCVS
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatcaggcggaaggttacagtggagaattcgaagaccatatcggacagcagc
agtagcacgactcccccctctcgcaggcccagcgtgtttgagagactcgggcctagcacg
cccagtaatgcagcagagactcattgtagaaactggttaaagactgggaactgcagttac
ggtaacacgtgtcgatacacacatgggaccccatcacgaggaaaaggctcatctggaaca
ttcaacaggtcagccgagaggccctctggggatctccgggagaggatgaaaagtaagaga
caggatgtagatggtgacacacagaaaagagatacagacgagcacacatcacccacaacc
agacagcgagattcatcccgaggcagacacagagagaaagaggatattaaaatcacaaag
gaacgcactccagctagtgaggaggagagcgctgattgggaagccagtcgtgaagattct
gacaacggtgactacgattacgagttatctcttgagataaagagacggaagattcagcgt
gagctgatgaagctggaacaggagaacatggacaaacgagaggagatcgtcatcaagaaa
gggggccctgtccccaagagcaggaccagtaatacttcaaagggcagggtttcccctgag
cgcagcagttctaagggatcaccctcgtcccgtaaatccagctcacccaaacgtaaagca
ggcaaggttgggagctccagcaagaaagagaagaagtcctctacttcctcagtcatctcc
tctccagtttctgaccagaccagggcagaggaaaaggacagcaggtcatctaagagtggc
catggcaaaagaaaagggccacaaacgcccagtcctcctccacctgtccctgtggagaac
ccagtgactgggaagaagcacaaaaataaacacaagaacaaggagaaatgtgaggacaaa
cctaaagaaggcaaagaacgaggacgagatacggagaaacacaaagagaaaaaggaaaaa
cgcagggaccggtctgatagttcccataaagccaaacgctcggtaacatcagaggaacgc
tctggaagtctttccccacccttaagggaaccgtcacccccagccagaaggaggttatcc
tcccctaaacccacttcccaaaaacagtcttcacagcagaggtctaaaactcctccccgt
cactgccgcagcccatcccctccctcccgacagcaccactccccatcttcacgctctggc
tcctcagcccagagacactccccatctcctccccacagacagggttctgtctctcctctt
taccatggccttcctcctccatcttcatcttcaccacctcccactcagtcctcgcgctgc
tcccggtccccgctcaccccacagagagatccttctccaacacccgctcctcgcaggtcc
agccccagccccagccccagtgcccgtcaccgctcccagggtagagaaagagagaggggg
agatcagagcgggacaagagtcctgcactgcaagagagacggcatgagcgcagagacgag
agccgcgggaagcgtgagaaagacagcagccgtgacgagcgagactatgaggtcgagcag
agctcctctcgagatgaccgcgatgcaaaggatggccgagaccggcgcattgaacgggat
agaagagatgtccgggaagagcgccagcaccgcggggagctcaaagacactcgggatacc
cgtgcaggagaaacacgagaccgctccggacgagaatccctggagcacagagagagagac
cgagaccgggaccgggagagagaaagagagagagaacgaagcgaaacccatagaaaggag
gaaatgacaccccaggaggaaaggaattatggaagaggacatggaagggaggaattgaga
aatgacagtagagtggacaacaggaatgagtctcgagctgaaagaacaggaagaggaagg
ggccgaggggatgccacagtcaaaggttctgctcgtgctggtagagcgtcacaggctgac
acttgcagtgcgagtgggcatgacagctgggagtcccgcagcagtggtctcagagagagg
agctcagagagaaacactgatcgtgatcgctacaataatgacagaccgagaggagaacag
cccagagatgaacgacggggaggacatgcagagagagaccgccgtgactacagagaaaga
gaacaaagagcgccttctcctgtccgccagcaaaaccgcagtgagcacctcgatcgtgaa
gagagaagagatgatcgaaggagtgatcgggcagatgacagacgagatgaccggacccgt
gagagagagaaggacagggagagagaaagagagaaggagagggagagagagagggagaaa
gaacgggaaagggaggctgaaagagagcgggaaagagtccgggagagggagcaggagaga
gagagggaaagagagcgagagagggagagggaggagcgagaaagagagagggaaagagaa
agagaaagagaggagcgggaaagggagcgagaagagcaggagaaagaaagggaacgagag
aggaaggagagggaacgggaaagggagcagagagagagagaacggcagagggagtgggat
gagagagaaaaagagagggaagagagacgaaaaaaaaaagatgattcgagagatgaccgc
tccgctcgagatgctcatgaagagagaaagaacactcgtaagagacgtgctgagaacact
cccagtccacgaccgtctcctaaaagagggcgagatgtgagccctgcagacagtgacagt
tacaacaggacggaggagaaaggtgataagcaccgactgttgagtcaagtggttcgtcct
caagaaacggtccgctctcctgtccgctctcctgtccgctctcctgtccgctcacctgcc
cgctcctttactgatgataaacacaagcgctggaaagatgaggataaaaaagaaagccgt
ggccgaaatgaggaggtggattctcgcggtgagagagcaacaggaagaggaacagagcga
catggagaacatactccagacatttctgctacaggcatttctgagtccagaagaggaaaa
gagcagagggacatccctactgccgcgcttactcctcctcctctttctgtagactcttta
ttagctgttcatgaagaggggaagaaaaagactaaatctcagaagaaaattctgaagaag
aaccgtaaagaggaggaatctggcggaggggaccgtagtaaccctgaacccccgtcctcc
tcctctatagctgaagccccccaggctctcctctcacctcgcaagacagccaagaagaag
gtcttagaaaggaagcgcaagcgctcacaaggtcctgagtcagatgtttctgaggacgag
ttggttgcccagcatccccttactaagaggcgacgaggtccacgcactcctccgccagtc
agcaaggaggaccttccctcccagagggctttaacggctggacagagttccctctctgct
aaaatagatgccaacttcagcgactggtctgacgaggatgtaccagagcgaggcgagacc
tcctctgcctccctgcaatctaataggcctccggagcggctgcttccctctgaacgtgcc
cctagaaggggtgcacgcggtggcggtcgggaccgttcggaccccccaatcgcccccctg
ctccctgaccctccaatgctgatacagtctcttcctttacaaccgttactgccgcaacac
atgctgcgtaaacctcagcaagcagacatgcagcagcgcagcaaccaaagccgcgctcct
tcgagaagactacgctcgccctccaatgagactgcccaccgcgatgaaggtcctcaggga
ctcaggacccgcagaggactcatgcaaggtggcaatattcgagagagagagcgagagagg
gaacgggacagagagtgggaacgagagagggagagagagcgggacagggcagtggccagt
gaacagatgggaggagagaggatgtcgaggattgatcagctccgcagaggagaacccagt
cgaagtacttcctcagaccggcaggactcccggagtcacagttctcgtcgtagttcacca
gagtctgagcgccaggctcgctccagagccggctcctacgagagccgcgagcgagaccgg
gagcgagatcgggatcagttggatcgagagcgtgagaaaaaggatccccgtctgatgcaa
aaccaacaagctccacagcgagactgggacctagaaccccgtgagtggggtgggcggggc
agagagcccctcctccgtggcaaccgtgagccagttagagagagagacttgcgggagatg
cgtgaaagggaacgacccttacctgaagggctgctggcacatgagcgaatggatcgtgag
cgtggtgaaagggaccgtgaacgggaaaggatgcttctgtttgaccctcaggctcacagg
gaaccaaagagcagatctgaaactaagatggagaggggagagtatgtgccgctgttgccc
agagaagccctaatggatgtagagaagccaacagacaactcacagctgcaaggggaagca
tctgaaccgaaaatggacagtcttgatgaagaggaggatggaaagggggatgatgcgcag
tctgctgtctcaggtggtgaggagtatgagccaatcagtgatgatgaactggacgagatt
ctggctgacagtcaaaagagggacgaacagcaagatgatgaaaagatttctgggcctcta
gatgtgattgatgtagattggtccagtttgatgcccaagcaaaaacaggagcctagaact
cctggggcagcgctgctccgattcaccccgggggctgtattgctcagagcaggggtgtcc
agacgcttagctgggcctcagctccttgccagagttaaagaagtgtgttccagagagttg
gaagaccctaaagatgctgataaactcttggagcatgatctgggtgctctgaacatggct
gcatacaacaggagaatggagagggccaacctactgaggagcctgggcccttgctgcaag
gcactgtgtgctcgcagagacattgccgtacgcagacagctcctgaaaaacgacaagggc
acaaccaagcagatctacaccagcactccggtggtagacaatgaacttatgcaatgcagt
ttacgtctctttaaaaagaaactggcctccagcctgtccagtggacagaagactgatgca
gcccaacacctgagcacaccagcagagctgtgcgtctcctga
DBGET
integrated database retrieval system
