Carassius gibelio (silver crucian carp): 127948538
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Entry
127948538 CDS
T08819
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cgib01001
]
127948538
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
127948538
Enzymes [BR:
cgib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127948538
Protein kinases [BR:
cgib01001
]
Serine/threonine kinases: Other
TAF1 family
127948538
Pattern recognition receptors [BR:
cgib04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127948538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_25
nSTAND_NTPase5
nSTAND3
AAA
Pox_A32
LRR_8
AAA_16
AAA_14
NB-ARC
VapE-like_dom
TsaE
AAA_24
nSTAND6
Roc
Motif
Other DBs
NCBI-GeneID:
127948538
NCBI-ProteinID:
XP_052400978
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All DBs
Position
A3:complement(14603742..14623021)
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AA seq
1146 aa
AA seq
DB search
MVPFEYVLSQVRKALQVSPSLLHELLRELHEANVFSTQYYQSLYKDGEDGECLRDLFYND
PEDLARRLTLPVWQNWGISQGILDSVLSKEKDMVPSDAEMQDIVVDLMSDLLPDSVFFEC
LNSLESIEEDFDPKCFDNFSVDTDRTSTPIPEKASFPGEVQSRKRKVDATSDSYCSNKKA
TAWPESPSNGRPATITPESSFHLSSNQLQHVLPFPFSPTLLPPSGGSPLQFIQPIGPYTA
PLIGTVVPSGTTYVIVSAVSPQCVSPGTQIIPLSPADGAVAPKELTVSELPVGSFSDSAC
QGLPPVSVDTLSPTKEGNAQKNYDSTPPKTERKIRPEAPECVKEYIHHIKSYMRDVCCSM
REGMEMESHYVDAHPVQRKLLIKSGKNANKCLEKELVVLSNSERKKAKLDRSQLFHNSDS
KLKQSVALLGKAGVGKTTFIQRLCLDWASGSMPQFQFVFLLNCQLLDLTQSNYSLKSLLL
DLSMSPRCEDSDSVFKHVLSCPDEVLIIFDSFDRIKDFEGLLQSPAKSHTNTKYTIKQLF
SGLFQKEILSGCTLLIATRPKDVLNQVLRKMDSLLELCGFSPQDIELYTSKYFGDSSLQE
SALKQIKNHRYISSLCSNPLLCSTICFLLEHQDSCNDDLPSTLTDLYQRATSKHLQLASL
ENNSLCKNRRQLDIPQLCKMAWEGLENHDSRVNPASCTELLDCALKSGILASYKTSECQE
NHFVDLFTQNLLSAVHLVQSEQVSEKMVVANSVVLQKKRKVQGESQDVLHRFVTGLVFRK
AADGVSILDGSVNIKAKRKAIETHLESMKPNDLVPARLLELFHCVYETSSAKFAKLLLKN
LPDNLSFYGTQLCPSDVYVICHLLQYASALKRTFSINLQDTCIPICGLKELVGLECIKSF
WAHTADTIGLWEDLHQNNDELNLKSAIEKFTLHPFKATQGYHIESLPVLVQIHRQKKLPM
SEFVSALDEGVPALRHLQRLEFELGVQNGPELFPKLIEVLPSLQSLQHLDLEKNQIGDSG
TEKLAGVLHFLECLKLLNLSQNHIGDVGVEKLAKALASVPSLQSLSLYGNAIADSGAENL
ASVLPNMNLLQDLDVKFNKFTDIGATKLSAALKNCTGMKSLELWNDCIPYGVFEHLHLQD
PRIRSL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggttccgtttgagtacgtactgtctcaggtgagaaaagctctacaggtcagccctagc
cttctgcacgagcttctgagagagctgcacgaggccaacgtcttctccacccagtattac
cagtctctctacaaggatggtgaagatggagagtgtttgcgtgaccttttttataatgat
ccagaagatctggccagaagactcactttacctgtctggcaaaactggggcattagtcaa
ggcatcctggattcagtactctccaaagagaaggatatggttccttctgatgctgaaatg
caagacattgtcgtagacctgatgtctgatcttttacctgacagtgtcttctttgaatgt
ctcaactcacttgagtctattgaagaagatttcgatcccaaatgctttgataacttttca
gttgacacggacagaacctccacgccaataccagaaaaggcttcttttccaggtgaagtg
caaagcagaaagcgaaaagttgatgcaacttcagacagttactgcagcaacaaaaaagca
actgcgtggcctgaaagtccctcaaacggaaggccagccaccattacccctgagagtagc
ttccatctgagctcaaaccagctccagcatgtgttacccttccctttcagtcccactctt
ctgccccctagtggaggttcaccactacaattcatccagcccatcggcccttatactgcg
cctctaattggcactgtggttccatcagggactacgtatgtgattgtatctgcagtgtcg
ccccagtgtgtgagtccaggcactcaaataattcctctttcacctgccgatggtgcagtt
gccccgaaagagctcactgtttccgaacttccagttggctcattttcagacagtgcatgc
cagggtttgccaccagtatctgtagacacactgtcccctacaaaagaaggaaacgcacag
aaaaactatgattccacacctccaaaaactgaaaggaaaatccgcccagaagcaccagaa
tgtgttaaggagtacatacatcacatcaaatcatacatgagagatgtctgctgctctatg
cgtgagggaatggaaatggagtcacactatgtggacgcgcatccggtacagaggaaactc
cttataaaatccggcaagaatgcaaataagtgtttggagaaagaactggtcgtccttagt
aattcagagcgaaagaaagcgaagctagaccgaagccagttgtttcataacagtgattcc
aaactaaaacagtcagtcgctctcctgggaaaagccggagtggggaaaaccacattcatt
cagcgtttatgcctggactgggcaagcggcagcatgcctcaatttcagtttgtttttttg
ttgaactgtcaacttttagacctcacgcaatctaactacagcttgaaaagtttactgttg
gatttgtctatgtctcctcgctgcgaggactcagactctgtgttcaaacacgttctgtcc
tgccctgatgaagttctcattatcttcgacagcttcgatcgcattaaagactttgagggg
cttctccaatcccctgctaaatcacacacaaacactaaatacaccatcaaacagcttttt
tcaggtttgttccaaaaggaaatcctctcgggctgcacgctcctcattgccacgaggcct
aaagatgttttaaatcaggtgctgcgaaaaatggacagccttttggagctttgtggcttc
tctcctcaggacatcgagttgtatacgtcaaaatattttggggattcctccctccaagaa
agtgcacttaaacagattaagaatcacagatacatatccagtttatgctccaacccgtta
ctttgttcgactatctgcttccttctcgagcaccaagacagctgcaatgatgatttgcct
tcaaccctcacagacttgtaccaaagagcgacctcaaagcatctgcaactagctagcctt
gaaaataactcactgtgtaaaaatagaagacagctggacatcccacagttgtgcaaaatg
gcatgggagggactcgagaatcatgattcacgtgtaaaccctgccagttgcacagagctg
ctggactgcgctcttaaaagtggcatacttgcatcctacaaaacatctgagtgccaggaa
aaccactttgtggaccttttcactcagaacctcctgagcgctgtgcacctggtacagtct
gaacaggtgagcgaaaaaatggtggtggcaaacagcgtagtccttcagaaaaaacgaaag
gttcagggagagtcgcaggacgtgctgcacaggtttgtcacgggcttggtcttccggaag
gctgctgatggagtcagcattctggacggcagtgtcaacataaaagccaaaagaaaggct
atcgaaacccatctggagagcatgaagcctaatgatttggttcctgccaggttactagaa
ctgtttcattgtgtttacgagaccagcagtgccaaatttgccaaactgctgttgaagaac
ctgcctgacaatctgtcattctatgggacgcagctttgcccgtcggacgtgtatgttata
tgccatctccttcaatatgccagcgcattgaagcggaccttctccattaacctgcaagat
acatgcattcccatctgtggcctgaaagagcttgtgggactcgagtgtatcaaatcattc
tgggcacacacagcagacaccattggcttatgggaggacttgcatcaaaacaatgatgaa
ctgaacttgaaaagtgccattgagaaattcaccttgcacccattcaaggcaacacaagga
tatcacatagagagcctgcctgtacttgtccaaattcacagacagaagaagttaccgatg
agtgaatttgtgtctgcactggatgaaggtgtaccagctctccgacatcttcagagactg
gagtttgagctcggagtccagaacggtcctgaacttttccctaaactcatagaggtcctg
ccttctctgcagtctctccaacatctggaccttgagaaaaaccaaataggagactctggc
actgagaaacttgctggcgttttacattttttggaatgtctgaaattgctaaatctgtct
caaaaccacattggagatgttggagtggagaaactggctaaagctttggcatcagtccct
tctctacagagtctcagcctctatggaaatgcaattgctgacagtggagctgaaaatctg
gcctcggttttaccaaacatgaacttactgcaggacttggatgtaaagttcaacaagttc
acagacattggagctacaaagctcagtgctgctctgaaaaactgcacaggaatgaagtct
ctggagctgtggaacgactgcattccatacggagtttttgaacacctccatcttcaagat
ccacggataagatcactttaa
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