Carassius gibelio (silver crucian carp): 127948609
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Entry
127948609 CDS
T08819
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127948609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127948609
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127948609
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
127948609
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
PCB_OB
Motif
Other DBs
NCBI-GeneID:
127948609
NCBI-ProteinID:
XP_052401128
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Position
B1:complement(31738421..31742711)
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AA seq
197 aa
AA seq
DB search
MSPMKLCVPVHTGERLCSTEDCIPGNGTYLRHGSIFASLAGYVLRKNEGEELPVISVVRE
TEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRREDVRATEKDKVET
YKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTH
AKEFRKVARVQPEYLQA
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccagttcacacaggtgaaaggctctgcagcacggag
gactgtattcccgggaacggcacgtatctgcggcacggctccatcttcgcttcgctcgcg
ggatacgtgctgaggaagaacgagggagaggagctcccggtgatttcagtcgtaagggag
acagaagcacagcttttgcctgacgtcggtgccattgtcacctgtaaggtgactagtatc
aacccacgatttgctaaagtccacatcttatacgtggggtcgactccgcttaaagacagg
tttagaggcacgatcagaagagaagacgtgagagcgacggagaaagacaaagtggagacg
tacaaaagcttcaggccaggcgatattgtccttgcaaaagtgatctctttgggtgacgtg
cagtcgaactatctgctgaccacagcagagaacgagttgggtgtagtggtggcccacagc
gaggcgggcgctcagatggtgcccatcagctggtgtgagatgcagtgtccacgtacacat
gccaaagagtttcgcaaggtcgcgcgggtacagccggagtacctgcaggcctga
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integrated database retrieval system
