Carassius gibelio (silver crucian carp): 127949091
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Entry
127949091 CDS
T08819
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127949091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127949091
03036 Chromosome and associated proteins [BR:
cgib03036
]
127949091
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127949091
Coactivators
SAGA/TFTC/STAGA complex
127949091
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127949091
STAGA complex
127949091
TFTC complex
127949091
SAGA complex
127949091
SLIK complex
127949091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
VPS8_N
WD40_like
PROPPIN
RAB3GAP2_N
LisH_PAC1
LisH_TPL
Beta-prop_WDR11_2nd
DUF4719
Motif
Other DBs
NCBI-GeneID:
127949091
NCBI-ProteinID:
XP_052401991
LinkDB
All DBs
Position
B1:29155923..29163462
Genome browser
AA seq
756 aa
AA seq
DB search
MKYYAAYVMTPLLSAPGGKMAAVQDGQMELDAEKETKPEVLSDGTSNLSGSTASGTPLTA
GGAPTQEDQQTLIAVLQFLKRNKLSDSVEILRREAGLGDQEDSQTLEGSGGGKGDGGGGD
ANSLLSRVSIPSAAAPQNTPTPATVKRADEQLDVSVVLSAYSQQGDPSLYQVYYTGLKNF
IESVLDCHRAELSQLFYPLFVHMYLELVYNNHESKAKAFFEKFGGDQECYYQDDLRILCG
LTKKEHLKGNEALLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDG
MPRSKSQIDSLSGSFAGEARREVNKVKVFHGLLKEPEIEVPLDDEDDEAENEEGKPKKKK
TKKDSVGSKSKKQDPNAPQQNRIPLPELKDSDKLDKVMYMKECTKRIRLNPENLPSICFY
SFLNAYQGLTAVDFTDDSSLLAGGFADSTVRVWSVTPKKLRKVKSATELNLIDKESDDVL
ERIMDEKTASELKILYGHGGPVYGLSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGH
NYPVWDTHFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVAT
GSTDRTIRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMI
GELKGHTDTIYALKFSRDGEILASGSMDNTVRLWDSIKAFDDVETDDFTAATGHVPLPDN
SQELLLGTYHSKSTPVTHLHFTRRNLLLAAGAYTSQ
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaagtactacgcggcgtacgtcatgacgccattgctttcagcgccagggggaaaaatg
gcggctgtgcaagatggacagatggagctggacgcagagaaagagacaaagccagaagtc
ctcagcgatgggacgtcaaacctctcggggagcacagcgagcgggacgcccctcaccgcc
ggcggagccccgacgcaggaggaccagcaaactttgatcgcagttctgcagtttctaaag
cggaataaactgtcggactcggtggagatcctgcggcgggaagccggtttaggagaccag
gaggactcacagactctcgagggcagcggaggagggaagggggacgggggtggaggggat
gcaaactctctgctcagccgggtgtccatcccatcagcagccgccccccaaaacacaccg
actcccgcaacagtcaagagagcagatgagcagctggatgtcagtgtggtgttatcagcg
tacagtcagcagggggatccctctctgtaccaggtgtactacaccggcctgaagaacttc
atcgagtccgtgctggactgtcaccgagcggagctgtcccagctcttctaccctctgttc
gtccacatgtacctggagctggtctacaacaaccatgagagtaaagcaaaggctttcttt
gagaagttcggcggcgatcaggagtgttactatcaggatgacctgcgcattctctgcggc
ctcactaagaaagagcacctgaaggggaacgaggcgctgctggacttccgcaccagccgg
ttcgtgctgcgcatctccagagactcgtaccagctgctcaagagacacttgcaggaaagg
cataataaccagatatggaacatcattcaggagcacttgtacatcgacatctttgacggc
atgccacgcagcaagagccagatcgacagcttgtccggcagttttgcaggagaggccagg
cgagaagtcaataaagtcaaggtattccatgggctgctaaaggagccagagatagaggtc
ccgttagatgatgaagatgatgaagcagagaatgaggaagggaagcccaagaagaagaaa
acaaaaaaagacagtgtgggctccaagagtaagaaacaagaccccaacgctcctcaacag
aacaggatccctctgccggagctgaaggactcagacaaactggacaaggtcatgtacatg
aaggagtgcaccaagagaatccggctcaacccggagaacctgccttccatttgcttctat
tcgttcctcaacgcctaccagggtttgacggcagtagacttcactgatgactccagtctg
ttagcgggagggtttgcagactccacagtccgcgtatggagcgtcacacctaaaaaacta
cgcaaagtcaaatctgcaacagagctgaatctgattgataaagagtctgatgacgttctg
gagaggatcatggatgagaagacggccagtgagctgaagatcctctacggtcacggcggg
ccggtgtacggtctcagcttcagtccagacaggaactatcttttgtccagttctgaggac
ggaacagtcagactgtggagcctgcaaacgtttacgtgtctcgtggggtataaaggacat
aactatccggtgtgggacactcacttctcaccctttggttattactttgtgtctggagga
catgacagagtagcacgcctctgggcgaccgatcattaccagcccttgcggatatttgct
gggcatctagctgacgtcacctgcacgcgattccaccccaactctaactatgtggccaca
ggctcgaccgaccgcactatacgcctctgggatgtcctgaatggaaactgtgtccgcatt
ttcacaggtcacaagggccccatccattctctagcattttcacccaatggaaagttcctg
gcatctggatccacagacgggagagttttactatgggatattggacatggactgatgatc
ggagagttaaagggtcacacagacactatttatgccctcaagttcagcagagatggagag
atcctcgcatcaggctctatggataacaccgttcgactatgggactccattaaggctttc
gatgatgtggagaccgacgacttcactgcagcgacgggccacgttcccctgccggataac
tcccaggagctgctgcttgggacgtatcacagcaaatccacacctgtcacccacctccac
ttcaccagacgcaacctgctactggctgcaggcgcgtacacctctcagtga
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integrated database retrieval system
