Carassius gibelio (silver crucian carp): 127949187
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Entry
127949187 CDS
T08819
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03030
DNA replication
cgib03410
Base excision repair
cgib03420
Nucleotide excision repair
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127949187
03410 Base excision repair
127949187
03420 Nucleotide excision repair
127949187
03430 Mismatch repair
127949187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgib03032
]
127949187
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127949187
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
127949187
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
127949187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
AAA_16
RuvB_N
BRCT_2
AAA_14
AAA_17
nSTAND3
RNA_helicase
AAA_18
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
127949187
NCBI-ProteinID:
XP_052402140
LinkDB
All DBs
Position
B1:complement(14240451..14254180)
Genome browser
AA seq
1141 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDEEQKKKQKSKTKVTSPTSDKKPSGKRKKRVIIDSD
SEEEKKEVKKEKKTKKGTKETDAVTVKKHPVTYVSDSDSDDTFMTLKKTKPKENGTAKGK
KESDSGKAKQVKVSSSKSPNAISKGGVKSSQPTISPKIGPTPPKQTPTSVMAFFGSSSVQ
RSDKKMVASTSTKRKAPSQETEELLSDEAIAKELQMDEDMEWEKQIHDDEEFARTLAKLD
EAPLLKKARVDSISPSKSSSHAVSSDTKPKKDPSPKKTPVKTSSKLAQMKRRQEEVEEQR
EKDRGEKQTKISPKKEPISPTSSERAATPKTSVSTGMTKSKNFSTPKSDSAPNKTSPTKP
ESTSPEDLEKKRVNSSAFRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESIERD
EAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIRTKPG
KKSKYEIAAEAENKSSKTRTPDSRGKPTTPSKKATPQGPSPNKRSTSGGKSKPGSASKSG
ALGASRSEVKKSLSFDQSKRASPVSHSTPGSEGSSLLWVDKYRPRSLKNLIGQQGDQSCA
NKLLRWLQNWHKHHSGNTKAPSAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEE
LGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGASQTVSSKHVLIMDEVDGMAGN
EDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAIMSIA
FKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGP
FDVCRKVFTSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLL
SKTADSICDGDLVDKQIRSRQAWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSS
AGKHSRIIQELASHMSLKTLSSKEAINLDYLPYLSSAILEPLQSQGSEGASQSLKLMDDY
DIIKDDVDNMMEISMWGGQPDPYSKLDSKVKAAFTRAYNKESHLMPYSLQVVKKSRKGAV
DPELLGELDSESQLQEEEDDDGLTADAMVKQKKAKPAKDVKQEKPGASGKGKGRGKGKAM
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaggttttttgcatccaccaaacctgcggcccccaaaccttccaatggc
agcaccagcacagatgaagagcagaagaagaaacaaaaatcaaagactaaggtcacaagt
cccacatctgacaagaaaccatctggaaaacgaaagaaaagagtcataattgattcagac
tctgaggaagagaagaaggaggtgaagaaggagaagaagaccaagaagggcactaaagag
acggatgccgtcacggtgaagaaacacccagtaacttacgtgtctgattctgattcggat
gatacgtttatgactctgaaaaagacgaaaccaaaagaaaatggaacagctaaaggcaag
aaagaatcagattcaggaaaagcaaaacaggtgaaagtctcatccagtaaatccccaaac
gcgatctcaaagggaggggtgaagagctctcagccaaccatctctccaaagattggacca
acaccaccaaaacaaactcctacttcagtaatggccttctttggcagctcaagcgttcag
aggtcagacaagaaaatggtggccagtaccagcaccaagaggaaggcaccctcacaggaa
accgaggagttgctcagtgatgaagccattgcaaaagaacttcagatggatgaagacatg
gagtgggaaaagcagatccatgatgatgaggaatttgcaagaacattagccaaactggat
gaagctcccttactgaaaaaggctcgtgtggactccatctccccctccaagagcagctct
catgcagtttcctcagacaccaaacccaaaaaggacccgtcccctaaaaagactcctgtg
aagaccagctccaaactggctcagatgaaaagacgacaggaagaagtggaagagcaaagg
gagaaagacaggggtgaaaagcagactaagatttctcctaagaaagagccgatctcacca
actagctcggagcgggcagctacgcccaaaactagtgtttccacgggaatgacaaaatca
aagaatttttccactcctaaaagtgacagtgcacccaataaaacctcaccaacaaaacca
gagagtacaagtcctgaggatctggagaaaaaacgggtaaattcatcagccttccgtaac
tatttgaaccgagaaggaccacgagcactggggtctaaagagataccacagggagcagag
aactgcctggagggttgtgtgtttgtgttgaccggtgtgttagaatctatagagagggat
gaagctaagtctctaatagagcgatacggcgggaaagtcacaggaaacgtcagccgtaaa
actacttaccttgttctgggacgagacagtggagtctcaaagactgagaaggcggaaagt
tttggaactaagatcattaatgaagatgagttgttggacctcataagaaccaaaccaggc
aagaagtcgaaatacgagattgcagcagaggcagagaataaatcctctaaaacaaggact
ccagactctagaggcaaacccactaccccatccaagaaggccacaccacaagggcccagc
cccaacaagagaagcacctcaggagggaagtctaagcctggatctgcttctaaatctgga
gcacttggggcctctcgttcagaggtcaaaaagagtttgagctttgatcaatccaagaga
gcatcccctgtatcccactctacccctgggagtgagggtagcagcctgttgtgggtggat
aagtaccgcccccgtagtctgaagaacctgattgggcagcagggggatcagagttgtgct
aacaagcttctgcgttggttacagaactggcataaacatcacagcggcaatacaaaagca
ccatcagccaaatttggaaagtttgggagtaaagatgacggttcaggatttaaggctgca
ttgctgtctggacctccgggtgttgggaagaccactactgctgctctcgtctgtgaggag
ttgggttacagctatgtggagatgaacgcaagctgcacccgcagtaagaacagcttaaag
gaagtgattgcagaatcactcaacaacaccagcattaagaacttctactccggtgcatcg
cagacagtgagcagtaaacacgtcctcataatggacgaggtggacgggatggcaggaaat
gaagacagaggaggaatacaggagatgattggtttgataaaacagtcaaagattcccatt
atctgcatgtgtaatgaccgcaatcatcagaagatccgttcgctggctaactactgctac
gacctgcggtttcagagaccccgtgttgagcagatcaagggggctataatgtctatagct
ttcaaagagggtctgaagatcccacccccagcacttaatgaagtcattctggcatctaat
caagatattcggcaggtactgcataatctgagcatgtggtctgctaaagacaaagtcatg
acctatgaccaggccaaagctgatgctaacaatgctaagaaggacatgaaactgggtcca
tttgatgtgtgtcggaaggtgtttacttcaggagaggaaaccgcccacatgtctttgatt
gacaaatcagaccttttcttccatgattactctttagcacctttatttgttcaagaaaac
tacctgcatgtccgaccagctgctgcagggggaaatctgaagaatcatttggtgttgttg
agtaaaaccgctgacagcatttgcgatggagatttagtggacaaacagatccgctccaga
caggcatggtctctgcttcccacacaggcgatttatgcgagcgtgttgcctggggaactg
atgcggggttatatgagtcagtttccgacctttccaagctggttgggcaagttctcatca
gctggcaaacacagccgcatcatacaggagcttgcttcacacatgagcctaaaaacgtta
agtagcaaggaagccataaatctggattacctgccgtatttgagctcagcaatattagag
cctcttcagtcgcaaggttcagagggagccagtcagagcttgaagctcatggatgattac
gacatcatcaaagatgatgttgataacatgatggagatcagtatgtggggcggacagccg
gatccttactctaaactagactccaaggtgaaagctgcatttacaagagcctacaataag
gaatcccatcttatgccgtactccttacaagtggtgaagaaaagccggaaaggtgctgtt
gaccctgagcttttaggagagcttgacagtgaatctcagttgcaggaagaggaagatgat
gatgggcttacagcagatgcaatggtcaagcagaagaaagctaaaccagcaaaagacgtc
aagcaagagaaaccaggggcttctgggaaggggaaaggcaggggtaaaggaaaggccatg
aagtga
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