Carassius gibelio (silver crucian carp): 127949498
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Entry
127949498 CDS
T08819
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127949498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127949498
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127949498
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127949498
Complex B
127949498
Complex C
U2 SnRNP specific factors
127949498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Gluconate_2-dh3
Motif
Other DBs
NCBI-GeneID:
127949498
NCBI-ProteinID:
XP_052402832
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All DBs
Position
A3:complement(17234107..17240873)
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AA seq
899 aa
AA seq
DB search
MNWNKGGPGGKRGFGFGGFSLGGGNKEEPSLPPKAHSAFGASGPSGGFGKNQQLSSFYKI
GTKRANLDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQAGGGGGGSDSEDDPLDAFM
AEVEDQAAKDMKKLEEKEKEKTLTKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEDEEE
VDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYIEHEELSSLTEAGVVELRRKL
NLKISGAVPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEQGEGPIAVVVCPTRELCQQIHSECKRFGKVYGLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVLQ
SGQEKWGWLTRRLVEFTSAGSVLIFVTKKTNCEELATNLNQEGYSLGLLHGDMDQSERNK
VIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAY
TLLTTKDTSFAGDLVRNLEGANQSVSRDLMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLG
YRERPGLGSESTERSSSGGGASLGNYEAYKPSTGAMGERMSALKQAFQAQYKNHFVAASG
VPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTQLSYSPSSSSSFISMPPPPALSSGT
KMSGFSSAGSLSSVSDSNSSSSSKEGSRSDRNSDDRGRHRDRESHYRHGDRHSGGDRDRY
GERDRHSDRDRHGDNRNGEGSNRDREGRSERDGGERSGTHKDSFVVPDAPKRKKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgggtggcaagcgaggctttggattcgggggattctct
cttgggggtgggaataaagaggagcctagtcttcccccgaaggcccactctgcatttgga
gcttcaggaccatcaggtggatttggcaagaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttggacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactcccccacaagaaagcagttt
caggctggaggaggtggagggggctccgacagtgaggatgaccctcttgatgcttttatg
gctgaggtggaggaccaagcagcaaaggacatgaagaaacttgaggaaaaggaaaaagag
aaaacgctgaccaagggtatacgggatgacatcgaagaggaggatgagcaagaagcatat
tttcgttacatggcagaaaacccaacagctgggctgacccaagaggaagatgaggaagaa
gtggactatgacagcgatgggaaccccattgctcctactaccaaaaagatcatcatgcca
ctgccccccattgaccactcagagattgactatcctccttttgagaagaacttctatatt
gagcatgaggaactcagcagtctgactgaggctggagtggtggaactgagacggaaactc
aatctgaagatttcaggtgcagtgcctcctaaaccagccaccagttttgcccactttgga
tttgacgagcagctcatgcaccagatccgtaaatccgagtacactcaacccacacccatc
cagtgtcagggtgttccgatagctttgggtggcagagacatgattggcattgccaaaact
ggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatggaccagaag
gagctggagcagggagagggacccattgctgtggtcgtctgccccaccagagagctctgt
caacagatccattctgaatgcaagcgtttcggaaaggtgtacggcctccgctcggtggca
gtatatggaggcggcagcatgtgggaacaagccaaagcattacaggaaggagccgaaatt
gttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctacatcactgcag
cgagtgacctaccttgtatttgatgaagccgatcgcatgttcgatatgggatttgaatac
caagtgagatccattgccagccatgtcagacctgatcgacagactctgttattcagtgca
acatttcggaagaaaatcgaaaagctggcgcgagatattttggtcgaccccattcgtgtt
gttcagggagacataggagaggctaatgaagatgtcactcagatagtggaggtgctgcag
tctgggcaggaaaagtggggttggctgacacgtaggctggttgagttcacctcagctggc
tctgtgctgatctttgtcactaaaaagactaactgtgaggaactggcaacaaatctgaat
caggaaggttatagcctagggctgctgcatggagacatggatcagagcgagaggaataaa
gtcattgctgactttaagaagaagaatctgcccgtattagtagctactgatgttgctgct
cgtgggttggatattccatctatccgtacagttgtgaactacgatgtagcacgagacatt
gacacacacacacatcgaattggtagaacaggtcgtgcaggagagaagggtgtagcttac
actctgctcaccactaaagatacttcatttgctggagacctggttcggaatttggaggga
gccaatcagagtgtttcgagggatcttatggacctggcaatgcagaatccctggttcagg
aaatcccggtttaagggagggaaagggaagaagctaaatattggaggtggaggcttgggt
tacagagagagaccaggccttggatctgaatccactgagcgcagtagtagtggtggtggt
gcttctcttggtaactatgaggcctacaaaccctccactggagccatgggagaacgtatg
tctgccctgaagcaagcatttcaggctcagtataaaaaccactttgtggcagcatctggt
gttcctcctaaactcaccacaaagtcgagcagctcctctgggtggaccagtgcaggaagt
ctaagttctttgccttcaggagcacctgaggggcctgacagaacccagctgtcctactcc
ccatcgtcctcttcctcctttatctccatgccaccaccccctgccctcagctcaggcacc
aaaatgagtggcttcagcagtgcaggctccctgagctcagtttcagactctaactctagc
tcttcttcgaaagaggggtcccgtagcgataggaatagtgatgacaggggtcgtcatcga
gatcgagagagtcattatcgtcatggtgacaggcatagtgggggagaccgtgatcgctat
ggggaaagggaccgccatagtgacagagatcgtcatggtgacaaccgaaacggtgaaggg
agcaatagggacagagagggacggtcagaaagagatgggggtgagaggtcggggactcat
aaagacagctttgtagttcctgatgcccccaaacgtaagaaaagcagatgggacaattaa
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