KEGG   Carassius gibelio (silver crucian carp): 127950809
Entry
127950809         CDS       T08819                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03020  RNA polymerase
cgib03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    127950809
  09124 Replication and repair
   03420 Nucleotide excision repair
    127950809
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cgib03021]
    127950809
   03400 DNA repair and recombination proteins [BR:cgib03400]
    127950809
Transcription machinery [BR:cgib03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     127950809
DNA repair and recombination proteins [BR:cgib03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      127950809
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 127950809
NCBI-ProteinID: XP_052404080
LinkDB
Position
B2:2354729..2357385
AA seq 141 aa
MAAGGAAHVGDVEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVF
MKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR
FEDEELQQILDDIQTKRSFQY
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcggcgggaggagcagcgcatgtgggggatgtggaggaggacgcgtctcagctcatg
tttcctaaagagtttgagaacgcagagaccctgctgaactcagaggtgcacatgttactg
gagcatcgcaagcagcagaacgagagcgcggaggacgagcaggagctgtccgaggtcttc
atgaagaccctcaactacacggccagattcagccgcttcaagaaccgagagaccatcgcc
agcgtgcgcagcttgcttctgcagaagaagctccataagtttgagctggccagtttagcc
aatctgtgtccggaggcagccgaggaggccaaagcactcatccccagtttggaaggccgg
tttgaggacgaggagttacagcaaatcctggatgacattcagaccaaacgcagcttccag
tactga

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