Carassius gibelio (silver crucian carp): 127951067
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Entry
127951067 CDS
T08819
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127951067
09122 Translation
03013 Nucleocytoplasmic transport
127951067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127951067
03041 Spliceosome [BR:
cgib03041
]
127951067
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127951067
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
127951067
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127951067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
127951067
NCBI-ProteinID:
XP_052404660
LinkDB
All DBs
Position
B2:3409503..3419565
Genome browser
AA seq
655 aa
AA seq
DB search
MSPPTHFDFTEARDTFTAATKSAVDIRNCKPLTNAFSHLPGNETEKKATLDQALRGVLEE
QIVKQKVNVEDFLSLIYISIDGVTEGICSASTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGLIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQDSTLGLQHTEVKEEGMEVEEGEMGDEDAPAPCSIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSFKLDDMQASKRKLEEMRTAAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKL
VYQLLRETPPDGDKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP
EDFLGKGPDRKILMGNDELTRLWNLNPDNMEACKSDSREFMPSLEDFFEEAIEQADPSNM
VEEEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDLPS
EEIKTGEEDDEENGDNLLKESNDSPSIQSKAVTNSQMDEIAAKLGSQWKMLADHLEMSEK
EIRVIESDSEDVELQAKMLLVAWQDREGPQATMESLVSALNAAGFSNITEGLSET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgactcacttcgacttcactgaagccagagatacattcacggctgccact
aaaagtgctgtggatatcaggaactgtaaacccctgaccaatgctttcagccatctgccg
ggaaatgaaacggagaagaaagccactctcgatcaagccctgcgtggagttcttgaagag
cagattgtgaagcagaaagtgaacgttgaagatttcctttctctgatctacatcagtata
gacggtgtgactgaaggcatctgttctgccagcactccttttcttcttctgggagatgtt
ctcgactgccttcctctggaccagtgcgacaaaatcttctcctttgttgaagaaaatgtg
tctacatggaaatctaataccttttactccgctggaaaaaattacttgttgagaatgtgc
aacgacctgctcaggagactctccaagtctcagaatacagtgttttgtggactaatccag
ctgtttttagcacgtctcttccctttgtcagaaaaatcaggcctgaacttacagagtcag
ttcaaccttgataacatcaccgtgttcaacaaaaatgagcaggatagcacacttggactg
cagcacaccgaggttaaggaggaagggatggaggtggaggagggagagatgggcgatgaa
gatgcacctgctccctgctccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgtgcagtgctatgacaagttctcatggatgactttc
ctgaagtattcagatgagacactagctgtgttcaagagcttcaagctggatgacatgcaa
gcgtcgaagagaaagctggaggagatgaggactgctgctggagaccacgtctactttgcg
aagttcctcaccagtgagaagttgatggaccttcagttgagtgacagcaacttcagacga
cacattctgcttcagtatctcatcctcttccagtatctcaagggccaggtcaagttcaag
agttccagctgtgttttgaatgacgatcagtctttgtggattgaggacacaaccaaacta
gtctatcagttattgagagaaacccctccagatggtgacaagtttgcgtcgatggttgag
cacatcctgaacaccgaagaaaactggaactcttggaaaaatgaaggctgtccaagcttt
gtgaaagaaagaccagcagagaccaaacccatccgtcccagcagaaagagacaagcacca
gaggactttttggggaagggccctgatcgcaaaatcctcatgggaaatgatgaactcaca
aggctctggaatctaaaccctgacaatatggaggcctgcaagtcagatagcagggagttc
atgccatccctggaggacttttttgaggaagctattgaacaggcagatccatcaaacatg
gtggaggaagaatacaaagttgtgcgtaactcaaactacggctggcgagccttgcgattg
ctctccagaaggagtccgcacttcttccagcccaccaaccagcagttcaagagtctagca
gactatctggagaacatggtcatcaaactggccaaagagcttcctaaagaccttccttct
gaggagataaaaacgggcgaggaggatgatgaggagaatggagataacctgttaaaagag
agcaatgacagtcccagcattcagagcaaggccgtgaccaacagtcagatggacgagatc
gcagccaagcttgggtcgcagtggaagatgctggcagaccacctggagatgagcgagaag
gagatccgcgtgatcgagtctgacagcgaggatgttgaactacaggccaagatgctgctg
gtggcctggcaggaccgagaaggccctcaagctacgatggagagcctggtctcggctctg
aacgcggctgggttcagtaacatcacagaaggtctcagcgaaacgtaa
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