Carassius gibelio (silver crucian carp): 127951082
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Entry
127951082 CDS
T08819
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127951082
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127951082
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
127951082
NCBI-ProteinID:
XP_052404681
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Position
B2:complement(15762170..15807782)
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AA seq
1275 aa
AA seq
DB search
MPRLLRKMKLWLLSWLVGAHLALIYRSSALHVMEERGSRGHLVLTELVGVPLPPSVSFIT
GYEGFPAYSFGPNANVGRLTQSFVPEPFFMDFAIIVTVKPSNSRGGVLFAITDPSQRIVH
LGLALTPVEDKTQRIVLYYSESGLADTMEVASFKVPDMTQQWNRFTLTVEHEEVRLYMDC
EEYHSAPLKRSQQPLSFEQGSGIFVANAGSTGLERFVGSIQQLVIKPDPRAAEEQCEEDD
PSASGDRSGDGDYDDEEEHGRHEVISQTNVREDKEKTHRPTYPFQAPPTVSPDMDEGEFS
GHVTPTDERLLTGGGTYKTDETGESTGDGSGQRQKGERGEPGPAGPPGPPGPPGPSLPPT
HSGQPEKRGPQGPMGPPGRQGRPGKDGQPGLKGEEGKPGQKGPPGPPGLPGESGVKGEKG
DPGVGLPGPQGPPGPPGPSKPIKVPYGFDALGSGFEDVDMDTERLRGPPGPPGPPGKPGP
PGPNGALLPGPPGAPGKDGRDGQPGLRAPPGQDGLTGQQGPKGAKGEQGIRGPSGPKGEH
GDPGLVGPMGPRGVPGPPGIPGPPGPPGPLSNNFMVDTLKDLEGSGESRLFLGAGISKGY
HGPPGLPGPPGPQGPPGTDGAPGLSVKGEPGSPGQDGIPGLAGLPGARGPKGDKGNPGEK
GERGRDGLSITGPPGPPGPPGPTINFQDLLLNDTAAKLNLTKIRGPPGPMGPEGLPGKAG
FPGPRGPKGEIGFPGIQGPPGLKGEKGEPGVSIAADGSVITGLKGPRGPKGMKGDIGPSG
RPGILGPIGPPGQKGEYGLPGRPGRAGIAGRKGDKGDSSGPPGPPGPPGPPGPPGRVIGL
NGTVFPVPPRPHCKIPVNNNNSQQGSGRASLGVKGDKGDVGNPGLRGTAVPLFPHGHVGA
KGDDGYKGQKGEKGDPGLPGSPGLPGRTGLVGPKGDSIVGPPGDTGPSGPPGLPGYGIPG
PQGPPGPPGPPGTPSAYGSAASLPGPPGPQGPPGAPGNGNPVRTYKNIQTLIRETNQAAE
GTLAYVIDKSELYIRVRGGWKKVELGELIPVPQDSSSSALSQGLSRPSDRSVPRVPSQEL
KSFRPDYHVFLQNSHSVPALHLVALNAPLRGDMHGIRGADYQCFQQARARGLTSTYRAFL
SSHLQDISSIVRKGDRFSLPVVNLKGDVLFSSWMAMFSGDGAVFDPLTPIYSFDGQNVMT
DEAWPHKVVWHGSNNAGIRMTTSYCEAWRTGDMAVTGQVSLLQTGRLLGQQTRSCSNHFI
VLCIENSYIQNTGKN
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgcccagactgctgaggaaaatgaaactttggctcctgtcgtggctcgtcggtgcgcat
ctcgccttgatttatcgctcatctgcgcttcatgtgatggaagagcgagggtccaggggt
cacctagtcctgactgaactagttggtgttcctcttcctccatctgtgtccttcatcact
ggctatgagggtttccctgcttacagttttgggcctaatgctaatgtaggtcgactgacc
caatcctttgtacctgagcccttcttcatggactttgccattattgtgaccgtcaagccc
tccaactctcgaggtggggttctgtttgccatcacagatccctcccagaggattgtccac
ttgggcttggcactgacgcctgtggaggataagacccagaggattgtactgtattacagt
gaatcagggcttgcagacaccatggaagtggcttcctttaaagtgcctgatatgacacag
cagtggaaccgctttacgctgacggttgagcatgaggaggttcggctttatatggattgt
gaggagtaccacagcgcccccctgaagagaagccagcagcccctcagctttgagcaaggc
tcgggaatcttcgtggcaaatgcgggcagcactggcctggagagatttgtggggtctatt
caacagctggtaataaaaccggaccctagggcagcggaagagcagtgtgaggaggatgac
cccagcgcctccggggacagaagtggtgatggtgattatgatgatgaagaagaacatggg
agacatgaagtaatcagtcagacaaatgtgagggaagacaaagaaaagacacatagaccc
acctatcctttccaagctccgcccactgtgtcccctgacatggacgaaggggagttttca
ggacatgtgacccctacagacgaaaggctgcttacaggtggagggacttacaaaacagat
gaaacaggggagagtacaggagatggttctggccagaggcaaaaaggggagcgtggagaa
cctggacctgcaggcccaccgggaccccccggccctcctggaccatctctcccacccaca
cattcgggacagcctgaaaagagaggtcctcaaggtccaatgggtccaccaggaagacaa
ggcagaccagggaaagatggacaacctggactcaaaggtgaagaaggaaaaccagggcag
aaaggacctccaggacctccaggattgcctggagaatctggagtcaaaggagaaaagggt
gatcctggggttggtctgcctggtccacaagggcctcccggaccaccggggccatccaaa
ccaattaaagttccatatggatttgatgctctcggctctggatttgaagacgttgacatg
gatacagaacgtcttagaggtccacctggtcctccagggcctccagggaaacctggcccg
cctgggcctaatggggctttgctgcctggaccaccaggtgcccctggcaaggatggcaga
gatgggcaacctggacttcgtgcgcctcctggtcaggatggcttaactggacaacaggga
cccaaaggagcaaagggtgaacaaggaataagagggccctctggacctaagggtgaacat
ggtgaccctggccttgtcggtcctatgggaccgaggggtgtacctggaccccctggcatt
cctggccctcctggcccaccaggacctttaagcaataacttcatggtggacactttgaag
gatttggagggttctggtgaaagcagattgtttctcggagctggaatttcgaaaggttat
catgggcctcctggtctacctggcccaccaggacctcagggacctcctggtactgatgga
gccccaggtttgtctgtaaagggtgaaccaggatcgccaggacaggatggaataccagga
ttagctggtttaccaggtgccagggggccaaagggggacaagggcaatccaggagagaag
ggtgagcgaggtcgtgatggactgagcataacagggcctcctggtccccctggcccacct
ggaccgaccattaacttccaggatctccttcttaatgatactgcagccaagttgaacctc
actaagatcagaggacctccaggccctatgggccctgaaggcttgcctggcaaagcagga
ttccctggcccaagaggaccaaaaggtgaaattgggtttcctggcattcaaggacctcca
ggactgaagggagaaaagggggagccaggtgtatctatagctgctgatggctctgtaata
acaggcctgaaaggacccagaggaccgaagggaatgaagggagacatcggcccttccgga
cggcctgggatattggggccgattggaccacctgggcaaaagggagaatatggacttcct
ggtcgaccgggcagggctggaatagctggaaggaaaggggacaagggagattctagtggc
ccccctggtccgccgggaccacctggacctccagggccaccaggacgagtaattggtctc
aatggaacagttttcccagttcctcctagaccacactgcaaaataccagtcaacaacaac
aattcacaacaaggcagtggaagagcatcattaggagtcaaaggggacaagggtgatgtg
ggaaatcctgggttgcgaggaactgcagtgcctttgtttcctcatggtcatgtgggtgct
aaaggtgatgatggctacaaggggcaaaagggagaaaaaggggatcctggtttgcctggc
tcaccggggctgcctgggaggacaggccttgtgggaccgaaaggtgactctattgttggt
cctcctggagacactggtccctcgggccctccaggactgcctggctatggaattccagga
ccacaggggccaccaggacctcctggaccaccaggcactccatctgcatatggctctgct
gcaagtctccctggacctccaggtcctcaaggaccgcctggtgctcctggcaatggaaac
cctgtgagaacatataaaaacattcagaccttgataagagagaccaatcaggctgcggaa
gggactctggcatatgttatagacaagagtgaactgtatatcagggtacgagggggctgg
aagaaagtagagctaggagagctaatcccagttcctcaagacagttcctcgtctgctttg
tcacaaggcctgagcagacccagcgaccgcagtgtacctagagttcctagccaggagttg
aagagcttccggccagactaccatgtttttctacagaattcgcactcagtgccagcattg
cacctggtggcactcaatgccccactcagaggggacatgcatggaatccgaggggcagat
tatcagtgtttccagcaagcccgtgcaaggggcctgacatccacttacagagctttcctc
tcctctcacctacaagacatttccagcatcgtcaggaaaggggaccgcttcagcttgcca
gtggtgaaccttaaaggagatgtgcttttcagcagctggatggctatgttctctggcgat
ggggctgtttttgatccacttacaccgatttattcctttgatggacaaaatgtcatgaca
gatgaagcttggcctcataaagtggtgtggcacggctcgaataacgcgggcatccgaatg
acaactagctactgtgaggcctggcggacgggtgacatggcggtgacgggacaggtgtct
cttctgcagaccggcagactgctggggcaacaaacgcgtagctgctcaaaccacttcatt
gtgctttgcattgagaacagctacatccagaacactggaaagaactag
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