Carassius gibelio (silver crucian carp): 127951228
Help
Entry
127951228 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04115
p53 signaling pathway
cgib04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127951228
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
127951228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
127951228
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127951228
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127951228
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
127951228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
zf-RING_UBOX
Beta-prop_DCAF4
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
zf-RING_10
WDR90_beta-prop_4th
zf-rbx1
UvrD-helicase
zf_C2H2_10
Terminase_2
Sina_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
127951228
NCBI-ProteinID:
XP_052404992
LinkDB
All DBs
Position
B2:21308809..21320629
Genome browser
AA seq
692 aa
AA seq
DB search
MSSTRQQQQSGGAAGSVPGTSSGSMSNSSGGGVGAGGANSGSSGAQNGNTSTNGVSSRTL
GSVAEGQSARLSSSSRKRPLYNGLINPYEDKSNDFVCPICFEMIEEAHMTKCGHSFCYKC
IRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEEKRLKRDHPNGTKWQVFQ
DVLGADQENMDLANVNYILEYLMQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQ
KELNFLEEDIKRVEEMSGMYTVSEMDPNLDSTVPQFEAPSPAPSSSIIDPTDYMQHPFGG
SSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDESRTVNQLDDFMECLSKF
TRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVD
IHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSV
DFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHC
VHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGH
INEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEF
VSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcactcggcagcagcagcagtccggcggtgcagcggggtccgtccccgggacg
agctctgggagtatgagtaacagtagcggcggcggcgttggcgccggtggagcgaacagc
gggagcagcggcgctcagaacgggaacacctcgactaacggggtgtcctcgcggactctg
ggctcggtagccgagggacagagcgctagactaagctcatcgagcaggaaaagacccttg
tacaacggtctcatcaatccatatgaggacaagagtaacgattttgtatgccctatatgt
tttgagatgatagaggaagcacacatgacaaagtgtggccacagtttctgttataaatgt
atacgacagagtttggaggacagcaacagatgcccaaaatgtaattatatcatagataat
gtggatcaactctaccccaactttttagtgaatgaactgatcctaaaacaaaaacaaaga
tctgaagagaagcgactgaaacgggatcaccctaatggaaccaaatggcaggttttccaa
gacgtcctaggtgcagatcaagagaatatggatttagccaatgtcaactacatactagag
tacctgatgcaaaaaaagaaacaactggaggcggaatcacaagctgctcagcgccagatc
ttaatggagttcctgaaagaagccagaagaaataaaagagagcaactggagcagttacaa
aaagaactcaactttttggaggaggatatcaaacgagttgaggaaatgagtggtatgtac
acagttagtgaaatggaccccaatttagacagtactgtaccccagtttgaagctccatct
cctgcacccagcagtagcataatagaccccacagattacatgcagcacccttttggtgga
agctcacagggtaaaagacaaacttggtacaacagcactctggcgtcacggcgtaagaga
ctgacggcacactttgaggatctggagcagtgttatttctccaataggatgtctcgaata
acggatgagagcaggactgttaaccaactggatgatttcatggagtgtctatcaaagttt
acccgttacaactctgtgaggcctctggccaccctatcatacgctagtgacctctataat
ggctccagtattgtgtccagcattgagtttgaccgggactgtgattactttgccattgct
ggtgtcactaagaaaattaaagtgtttgagtacggcactgtgatccaggatgctgtggac
attcattatcctgtcaatgaaatgacatgtaactctaaaattagctgtatcagctggagt
agctaccacaaaaatctgttagcgagcagcgattatgaggggactgtcattctttgggat
gggttcacaggacagaggtcaaaggtctaccaggaacatgaaaagcggtgttggagtgtc
gatttcaatcttatggatcccaagctcttagcatcaggatccgatgacgcaaaagtcaag
ttgtggtccaccaacttggacaattcagtagccagcattgaagcgaaggccaatgtatgc
tgtgtcaagttcagtccatcctctcgatatcaccttgccttcggatgtgcagaccactgt
gtgcactactatgacctgagaaacactaagcagcccatcatggttttcaaaggccacagg
aaagcggtgtcctatgccaaatttgtcaatggagaagagattgtgtctgcgtcaacggac
agccagctgaaactctggaatgtgaacaagccacattgtttacgctcatttaaaggccac
ataaacgagaagaactttgtgggtctggcatctaatggagactatgtagcatgtggaagt
gaaaacaactcactgtacttgtactacaaggggctctccaagacgctgctgactttcaag
tttgacactgtgaagagtgtcctggacaaggacaagaaagaagatgacaccaatgagttt
gtcagcgcagtgtgctggcgagctctacctgatggggagtcaaatgtgttgattgcagcc
aacagtcaaggaacaatcaaggtacttgagctggtctga
DBGET
integrated database retrieval system
