Carassius gibelio (silver crucian carp): 127951245
Help
Entry
127951245 CDS
T08819
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127951245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127951245
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127951245
mRNA cycle factors
Common to processing body (P body) and stress granule
127951245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
127951245
NCBI-ProteinID:
XP_052405019
LinkDB
All DBs
Position
B2:21787594..21814032
Genome browser
AA seq
1169 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLCKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLSNEADEHSYSSDEQISWIQLLGLFMSFLGVMLSRALLNKNREEIMGECPL
PAIKVSLDWLRLRPSVFNESPMDKRQYIWPWLVSILNSFQPKEEDVSDSSVIPLPEEFEL
QGFLALRPALRMLDFSKGHQGVVIGKESLLIHARHQRLISLGKWVADNQPQLIQCRISDG
LLLFITDIPEVVVEEPLEKDTPVLQESSNGELMPNDSTQGLKSVLSAGKNQNSGLDGSER
PVVTFKENIKPREQSREPNRNQHQRDAGKDKAGFNKGNGIQGKNEPKKEGKRKSEVKKTS
LDKTADAGKQVKTQTEMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFP
PPAYVIPPPVAFSMSPGFTFPTGVSVPAPFLQTASHPQSANPVQTGKPSHIPYSQQRPSG
PGALNQGPPQPQQTQPSQQALQQSVQLQVQQQQQQQQQSPTKQSSQLGKSPPHHHSMQQS
YMQVAEQPGQMWNQHQTQPTMQKMPMQMPVKQPFFMPTQDPMKLFEQHPMSMQPPQPSMD
KKMKFPEVRMQDFYWEPSYHMGGEGRSGIGDRMAKRQPGVFCPDQENMPRGPPYEDNKSS
PLLPPDLLKTLADFEEEEELLFTKPHDFYQALAGPLNSAPGRNMFLPNQSRLDSGADVIG
QSSLLPRFSIQESSYQNNSIFSEAYGKNMAPASKHDVPMMHQEPSLYSLFEGTPWSPSLP
ASSDHSTPASQSPHSSNPSSLPSSPPTHSHSSLPISNFGPIGTPDSRDRRGNDRWKADKS
GVSSFGLDYLQSASSSSVPDTNSWHQGAQTSSWAAQDMPMEDSSTVLLDSFKSIWSSSMM
QPGPSALEQLLMQQKQKQQRGHGNMNPPH
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttacggcaggcagaggccctgaaggctgacatgacagat
tcaaagctaggtgccgcggaggtctggacatcacggcaggctcttcaggacttgtaccag
aaaatgctggttacggacctggagtacgccctggacaagaaagtggaacaagatctctgg
aaccatgcttttaagaatcaaataaccacactacagagtcaagctaagaaccgggccaac
cccaatcgaagtgaagtacaggccaatctctccctgtttcttgaggcagctagtggattc
tacacacaactgttgcaggagctgtgcacggtatttaatgtggacttaccttgccgtgtg
aaatcatctcagcttggcatcatcagcaataaacagagcagcaccagcgccatagtgaag
ccccaacccagctcctgttcctacatctgccagcactgtcttgttcatcttggagatatt
gcacgttatcggaaccaaaccagccaggctgagtcgtattatagacatgcagctcaactt
gttccctcaaatggtcaaccttacaatcaactggccatcctggcttcctccaaaggagac
cacctcacaacaatcttctactactgcaggagcattgctgtcaaattcccctttcctgct
gcttccaccaacctacagaaagctctttccaaggcccttgagagccgtgatgaggtcaaa
acaaaatggagcgtgtctgattttattaaggccttcatcaagttccatggccatgtttat
ctctgcaaaagcttggataagttgaacaccctgagagagaaattagaggagcagttccag
aggctgattctgcagaaagccttcagctcccagcagctggtccacatcacagtgataaac
ctgtttgaactgcaccacctccgagacctcagcaatgaggcagatgagcacagctacagc
tcagacgagcagatcagctggatccagctcctcggcctcttcatgtcttttctgggcgtg
atgctaagccgagctttactcaataagaaccgagaggagatcatgggagagtgccctctt
cctgccatcaaagtgtctctggattggctgaggcttcgaccgagtgtgtttaatgaaagt
cccatggacaagcgacagtacatctggccatggctggtgtccattctgaacagctttcag
ccaaaggaggaggatgtgtcagattcgtcagtgattccactgccggaggagtttgaattg
caaggatttctggcccttcggcctgctctgcgaatgctagacttctctaaagggcatcag
ggtgttgtgattggcaaagagagcttgttaattcatgcccgacaccagagactcatcagc
ctgggcaagtgggtggctgacaaccaaccacaattgatccagtgtcgcataagtgatggc
cttctgctcttcatcactgatatcccggaggtggtggtggaagagccactggaaaaagac
acacctgtcctccaggagtcatctaatggtgagctgatgcctaacgacagcacacagggc
ctaaagtcggtcctctcggccggaaagaaccagaacagtgggctggatggcagtgagaga
cctgtggtcaccttcaaagagaacatcaaacctcgagagcagagtagagaaccgaaccgg
aaccagcaccagagggatgcagggaaggacaaagctggatttaataaaggaaatggaata
caagggaagaacgaaccgaagaaagagggcaaaagaaagagcgaggtgaagaaaaccagt
cttgataaaacagcggatgctgggaaacaggtgaagactcagacagagatgaggaagact
ccagtgtcagaggcgaggaagactccagtcacacagacacaaaccacatgctcttcacag
tttatcccaatccaccacccaggagctttcccccctctgcccagcagaccaggtttcccc
ccgccagcatacgtgatccctcctcctgtggcattctccatgagcccgggatttaccttc
cccacaggtgtatccgtacctgcacccttcctccagactgcttcccaccctcaatctgcc
aatccagtgcagacagggaaaccctcacacattccctacagccagcagaggccctcaggc
cctggagccctaaaccaaggccctccacagcctcagcagacacagccatcccaacaggcc
ttgcaacaatctgtgcagcttcaagtacagcaacaacaacagcagcagcagcagtcgccc
acaaaacagagctctcagcttggtaaaagtccgccacatcatcacagcatgcaacagtct
tacatgcaggtggctgaacagcctggtcaaatgtggaaccagcaccaaactcagcccacc
atgcagaagatgcccatgcagatgccagtcaaacagcctttcttcatgcccacccaagac
ccaatgaaactctttgaacaacaccccatgagcatgcagccccctcagcccagcatggac
aagaagatgaagtttccggaggtcagaatgcaagatttctattgggagccttcttaccac
atgggaggagagggcaggagtggaataggggacagaatggccaaacgtcagcctggagtc
ttctgccccgaccaggagaacatgcccagaggccctccatacgaagacaacaagagctcc
cctcttctgcccccagacctgttaaagactctggcggactttgaggaggaggaggaattg
ctttttactaaacctcatgatttctaccaggccttggctggccctcttaattctgctcct
ggaaggaacatgtttttgccaaatcagtcacgactagacagtggagctgatgtgattggc
cagtcctctcttctcccccgattttccattcaggagagctcctaccagaacaacagcatt
tttagcgaggcctatggaaaaaatatggctcctgcgtctaagcatgatgtacccatgatg
caccaggagccttcactctactccctgtttgaaggaactccatggtccccctcccttcct
gccagctcagatcactctacaccagccagtcagtcccctcactcttctaacccaagcagt
ctgccttcatccccacccacccacagccacagctccctacccatctccaacttcggccct
atcgggacgcctgacagcagagaccgccggggaaacgatcgctggaaggctgataagtct
ggtgtgagcagctttgggttggactacctgcagtctgcctcgtcctcctctgtgccagat
accaacagctggcaccagggggcacaaaccagcagctgggcggcccaggacatgccaatg
gaggactcctctactgtcctccttgacagtttcaagtcaatctggtcgagctctatgatg
cagcccggtccgtctgctctggagcagctcctgatgcagcagaaacagaagcagcagcgc
ggccacggcaacatgaatccgccacactga
DBGET
integrated database retrieval system
