Carassius gibelio (silver crucian carp): 127951657
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Entry
127951657 CDS
T08819
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03320
PPAR signaling pathway
cgib04148
Efferocytosis
cgib04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127951657
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
127951657
03320 PPAR signaling pathway
127951657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127951657
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgib03310
]
127951657
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
127951657
Nuclear receptors [BR:
cgib03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
127951657
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
127951657
NCBI-ProteinID:
XP_052405620
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Position
B2:14374333..14387206
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AA seq
441 aa
AA seq
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MDNNNTYLHLSSSLQVTHGHLSSPPSQPPLSSMVSHHHPSIINGLGSPYSVITSSSLGSP
SASLPTTSSMGYGALNSPQMNPMNSVSSSEDIKPPPGLTGLGSYPCSSPGSLSKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTIRKDLSYTCRDCKDCQIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRGREKSDNEVESSSSFNEEMPVEKILDAELAVEPKTEAYMESSTGNSR
NDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVK
DGILLATGLHVHRSSAHTAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAK
GLSNPSEVEALREKVYASLEAYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQIT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggataataacaacacatatctgcatcttagttcttctttgcaggtaacacacggtcac
ctgagctctcctccgtcccagcctcctctcagctccatggtgtcccaccatcacccctcc
atcatcaacggtctagggtcgccatactcggtcatcacttcctcctctctgggctcacct
tcagcctccttgcccaccacctccagcatgggctatggagcgctcaacagtccacagatg
aaccctatgaacagtgttagcagctcagaagacattaaacctcctccagggctgacggga
ctggggagttacccctgcagcagcccggggtccctctccaaacacatctgtgccatctgt
ggagaccgatcctcggggaaacactatggtgtttacagctgtgaaggatgcaagggcttc
ttcaagagaactatccggaaagatctctcgtacacgtgtcgagactgtaaagactgccag
attgacaaacgccagcgtaaccgctgccagtactgccgctatcagaagtgtctggccatg
ggcatgaagagagaagcggtgcaggaagagaggcagcggggtcgggaaaagagtgataat
gaggtggagtctagtagcagctttaatgaagaaatgccagtggagaagattctggacgct
gaacttgcagtggaacccaagactgaggcttacatggagtccagcacaggcaactcgagg
aatgacccagtgaccaacatctgccaggctgcagacaagcagctctttactcttgttgag
tgggctaagagaatcccgcacttctcggaccttcctctggatgaccaggtcatcctgctg
cgagcaggttggaacgagctgctcatcgcttcattctcacatcgttctgtgacggttaag
gatgggatcctcttggccaccggcctgcacgtccatcgcagcagcgctcacaccgcaggg
gtcggctctatatttgacagggtattaacagagctggtgtctaagatgaaggacatgcag
atggacaagacggagctgggctgtctaagagctatcgtcctctttaacccagatgcaaaa
ggattgtcaaacccatcagaggttgaggcattacgggaaaaagtgtacgcttcactggag
gcctacaccaaacacaattaccctgatcagcccggcaggtttgccaagctgctcctccgt
ctgcccgctctgcgctccataggactgaagtgcctggagcatctgttcttcttcaaactc
atcggagacacacctatagacactttcctcatggagatgctggaggcgccgcatcaaatc
acatga
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