Carassius gibelio (silver crucian carp): 127951871
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Entry
127951871 CDS
T08819
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127951871
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
127951871
3'-5' decay
Other 3'-5' decay factors
127951871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
zf-CCCH
ResIII
UvrD-helicase
PAM2
zf_CCCH_4
PhoH
AAA_22
AAA_16
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
127951871
NCBI-ProteinID:
XP_052405917
LinkDB
All DBs
Position
B3:complement(30026402..30087439)
Genome browser
AA seq
1886 aa
AA seq
DB search
MEDRRPQKSCDEAIGSLVRQEYEAAVAHSTEALLAMGPRTLAPSTAFLRKRALLYRIAAR
LQLKDYDQADEDCKHVFAEELGKEEGSFRAGLQSMLLDGSLQEVCSVLSKALYGEPLNGI
MTKDMTRLKRLLSEIEAVRSKMPSELGEENEEDVQEGWQFRAPPRGVTSSEEYTLCKRFL
EQGLCRYGAQCTSAHSQEELTEWQRRYASRLIRLKQQQEGKHFTENYMEALIEKWINSLT
PERVMNDCLDGVTVEHSSDLSITVNTKKSSHSWTFTIFCKPVRTLHRIALLYDANRPHFS
ITAVSAGDASTQVPQEVCEGGCQEWSAAGPVQNGMDHCVYIVVVSFCTEIFGTFRQTVVF
DFGSEPVLMQRVMVDAASIEDLEHLMQARQQLLMTAKRWDSSCKTIVEFVPNENMDLERS
LLTRYQIPLSADQLFTQSVLDKTLTRDNYQPRLHDLLYIEEIAQYKEVSKFNIKVNLQLV
TSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPVFKERMGQN
QPAGAKERVYEALIEEKTKDYIFLRICRDCCGELGLVADQELQVELQFQLNRLPLCEMHY
ALDRIRDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSINLPPVL
IIGPYGTGKTFTLAQAVKHILKQPETRVLICTHSNSAADLYIKDYLHPYVEAGNPHARPL
RVYFRNRWVKTVHPLVQQYCLISGAYYTFQMPTRQDVERHRVVVVTLSTSQYLCQLDLEP
GIFTHILLDEAAQAMECETIMPLALATKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLL
DRLYEHYPSEYPCRILLCENYRSHEAIIKYTSELFYEGKLMASGKQPPHKDFYPLTFFTA
RGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRA
ELRKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDY
GFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHENQSLHGITFEQI
KIQLEALELKKTYVLNPLAPEFIPRALRSQHPQGPGKHQHSPPKAKGQLANHTEPFPPEG
FVQPSAAVLMGNPVQAFTPPGAGAPASGKSPSPVQRIDPGASILYVPAVYGGNMVMPVPL
QLPWPGYQSRFAVDPRIMSHQAAMAAYNLNLRPAASRTSPVLYGFNHPSPLSLNQQPTSE
KELLQEPSGNGKVDINGKTEHCRLLTPERKGPELKEKQGDPELVQNKSPEPQANMGFPGS
RLMRKDPQAQRALNFHLGPPHPGFPPHHGNNPFPQQYGLSRPPLRMQAPIHPQAFPQSFF
SGPPMAHRGLQSPVLGGPEGGEGSMGAGPGGVAEDLKGVVRGLPPQMHQQPLRLNSFGEE
SLDSLLGDTLDGQASSGLDALGQQQQQARMGQWGEQSPFLQAGVAPFPLAQQLAHLGQPG
LRFPQQLLRGGWGLGLGPAAEEEPRPAMPRYPGLLREMLPQDQYEQREPADMPPPQSRLL
QYRQVQPRTPGDLPSPSSSGSNHTSGPNPFPAPGAHSFPDTSRELPIGGQPFQQHQAFNQ
ASFSLPPEHTAGPLPVKYLLQEAHWPHPGLPQGHVLGHGMPFGLQAMAHRQEQGPLTQLQ
HQQQKQQLQAPQSSLHSVEEYEPRGPGRPLYQRRISSSSPQPYPDSLDPQDHPTPSYRYP
SADLWLGSSGPGPSPAPLHNIPCNGASHLVPHREVLVSKAISVADEQQSPHPASAASLQH
HGQFPPLMSSKQTPPDPGGDNTSPGGPQGPGNSKPPTMSYASALRAPPKPRPLPEQVKKN
SDPISLLQELSIGSSNSSNGYYTYFK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggaggccacagaagtcatgtgacgaggccattggatcattagtgaggcag
gagtatgaggcggcagtggctcacagcacagaggccctgctggccatggggccccggacc
ctggcccccagcacggccttcctccgaaagcgtgccctgctctaccgcatagcagcacga
ctccagctgaaggactacgatcaggctgatgaagactgcaagcatgtgtttgctgaggag
ttagggaaggaagagggcagtttcagggcaggtcttcaaagtatgctgctggatggaagc
ttacaggaagtgtgcagcgttctctctaaagctctatatggagaaccactgaatggaatc
atgactaaagacatgacaagactgaagaggcttctttcagaaatagaggctgtgagaagt
aaaatgccgtcagagttgggtgaagagaacgaggaggatgttcaggaaggctggcagttt
cgtgctcctcctcgaggcgtcactagtagtgaggagtatacgttgtgtaaaaggttttta
gagcagggtctgtgtcggtacggagctcagtgcacctcggctcactctcaggaggagctg
acagaatggcaacggcgctacgcctcccgactcatccgcctcaaacagcagcaggagggc
aagcacttcaccgagaactacatggaggcgctcatcgagaaatggatcaactccctcacc
ccagagagagtgatgaatgactgtttggatggagttacagtggagcacagctcagatctc
tcgattaccgtcaacaccaagaaatcgtctcactcctggacgttcacaatcttctgcaag
ccggtccgtacactacaccgcatagctttgctttacgatgccaaccggccacatttctcc
atcacggcggtctcggctggggacgcatctacccaggtgccccaggaggtgtgtgagggc
ggctgtcaggagtggagcgccgccggcccggtacagaacggcatggaccactgcgtttac
attgtggtggtctccttctgcaccgagatcttcggaaccttccggcagaccgtggtgttt
gattttggctctgagcccgtgctcatgcagcgagtgatggtggacgccgcttccattgaa
gatctggagcacttgatgcaagcgcgacagcagctcctgatgacagctaagcgctgggac
tcgtcatgtaaaaccatcgtggagtttgtccctaatgaaaacatggatctagagcgcagt
ctactgacccgctatcagatccctctatctgccgaccagctcttcacccagtctgtgctg
gacaaaaccctcaccagagacaattaccagccccgcctgcatgacctgctctacatcgag
gagatcgctcagtacaaagaagtcagcaagttcaacatcaaggttaacctgcagctggtg
acaagctttatgttgactggcatttctggtggtgcaaagtatgctcagaacggacagttg
tttgcacgcttcaagttgacggagacactgtctgaagatacgctggctgggcggctggtc
atgacaaaggtcaactctgtgctgctgctgcctgtctttaaggagcggatgggtcagaac
cagccagctggagccaaggaacgcgtgtatgaggccctgattgaggaaaaaacaaaagac
tacatttttctgcggatctgtagggactgctgtggggagctggggctggtggcggatcag
gagctgcaggtggagctgcagtttcagctgaataggcttcctctgtgtgagatgcactac
gctctggatcgcatccgcgataatgggatcctgtttccagatgccagcctcactcccaca
atcccctggagtcccaataggcagtgggatgagcagctggatccccgtctgaatgccaag
cagaaggaggctattctggccatcaccacccccctctccatcaacctcccgccggtgctc
atcatcggaccctacggcacaggcaagaccttcacgctggcccaggctgtcaaacacatc
ctcaagcagcctgaaacacgggttctgatctgtacacattcaaacagtgcagcagatctg
tatatcaaagattaccttcatccatatgtggaggcaggcaatccacacgcacgacctctc
agggtttacttcaggaaccgctgggtgaagacggtgcacccgctggtgcagcagtactgc
ctgatctccggagcgtactacaccttccagatgcccacgcgacaggatgtagagcgccac
cgtgtggtcgtggtcacgctcagcacgtctcagtacctctgccagcttgacctggagcct
gggatctttacacacatcctgttggacgaggcagcccaagctatggagtgcgagaccatc
atgccattggctttggccactaagagcacccgagtcgttctggcaggagaccatatgcag
ctcagtccgtttgtgtacagtgagtttgcgcgggagaggaatctgcacgtgtctctgctg
gaccggctgtacgagcattacccatctgagtacccctgcaggatcctgctgtgcgaaaac
taccgctcccatgaggcaatcatcaaatatacgtctgagctcttctacgagggcaaactg
atggccagcgggaagcagccgccccataaagacttctaccctctgaccttcttcactgcc
cgtggagaagatgtgcaagagaagaacagcacggcttactacaacaacgctgaggtgttt
gagatagttgagcgggtggaggagatgaggaagaagtggcctgtggcctgggggaagctg
gacgaaggaagtatcggtgtggtctcgccctacgccgaccaggtcttcagaatcagagcc
gaactccgcaaaaagaggatgcctgaagtcagcgtggagagagtgctcaatgtccagggt
aagcagttccgcgtgctgttcttgagcaccgttcgcacgcgtcacacctgcaaacacaag
cagacggccatcaagaggaaggagcagctggtggaggactccactgaagacctggactac
ggcttcctgtctaactacaagctgctgaacaccgccatcactcgagcgcagtccctggtg
gccgtggtgggagaccccatcgctctctgctcagtgggacgctgcagaaagttctgggag
accttcatctccatctgtcatgagaaccaaagtctccatggcatcacctttgaacaaatt
aaaatccagctggaggccctggagctaaaaaagacctacgtgctcaacccgctggcccca
gagttcatccctcgtgccctgcgctcgcaacatccccagggtcccggcaagcaccagcac
tccccacccaaggcgaaaggacagctggccaatcacactgaacccttcccccctgaaggc
tttgttcaacccagtgctgctgtgctgatggggaacccggttcaagcttttactccacca
ggagccggagctccagcctctggcaaatcaccaagccctgttcaaagaatcgaccctgga
gccagcatcctgtatgtgcccgctgtctatgggggaaatatggtgatgcctgtgcctctt
caactgccgtggcccggctaccagagccgttttgctgtggatcctcgcatcatgagtcac
caggccgccatggccgcatacaacctcaacctgcggccagcagccagtcgcacctcacct
gtgctctatgggttcaatcacccatctcctctaagcctgaaccagcagcccacctctgag
aaagaactacttcaggagcccagtgggaatgggaaagttgacattaatggaaaaacggag
cattgtaggctgctgacgcccgagaggaaaggccctgagctgaaggaaaaacagggagac
ccagagttggtgcaaaacaagagtccagagccccaggccaacatgggctttcctggcagc
cgcctcatgcgcaaagacccgcaggcccagagggccctcaacttccacctgggccccccg
catcccggttttccccctcatcatgggaacaacccgtttccgcagcagtatggactatcc
cgacctcccctccgaatgcaggcccccatccaccctcaggcctttccccaatcgttcttc
agtgggcctccaatggcgcaccgtgggctgcagtctccggtgctgggggggccggagggt
ggcgagggctcaatgggagctggtccaggaggggtggctgaggatctaaagggtgtggtg
agaggcctccccccacagatgcaccagcagcccctgcgcctcaacagttttggagaagag
agtttggactctctgttgggcgatactctggatggtcaggcttcctcagggctggatgct
ctgggccagcagcagcagcaggctcgtatgggtcagtggggtgaacagtctccgttcctg
caggccggtgttgcccccttccccctggcgcagcagttggctcatcttggccagccgggt
ctgcgattcccccagcagctcctccgaggcggctggggcttgggcctgggccctgctgca
gaggaggagcccagacctgccatgcccagatatcccggtctgttgcgtgaaatgctccct
caagaccagtatgagcagcgggagccagcagacatgccccctcctcagtcgcgccttctt
cagtaccgtcaagtacagccccgaacccccggagacctgccatctccctcttcatctggc
tcaaaccacacttctggccccaatcccttcccagctcccggtgcgcactctttccccgac
accagccgagagctgcccatcggcggccagcccttccagcagcaccaagccttcaatcag
gcctccttctccctgcctcccgagcacacagcggggccccttccggtcaaatacctcctc
caggaggcccactggccccaccctggcctaccccagggccatgtgctgggccacggcatg
ccctttgggctgcaggccatggcgcacaggcaagagcagggccccctcacacagctgcag
caccagcagcagaaacagcagctccaggccccgcagagctccctgcacagtgtagaagag
tatgaaccacggggccccgggcggcctctataccagaggaggatctcctccagctccccc
cagccgtatccggacagcctggaccctcaggaccaccccacgccctcctacagatacccc
tcagcagacctatggctgggcagcagcgggcccggcccgagccccgctcctctccacaac
attccatgtaacggagcgagccacctcgtccctcacagggaggttttagtttcaaaggcg
ataagcgtcgcagatgagcagcagtcgcctcaccccgccagcgccgcgtctctccagcac
cacggacagttcccacccctcatgtctagcaagcaaaccccgcctgacccgggaggggac
aacaccagcccagggggcccccaggggcccggcaactccaagccccccaccatgtcctac
gccagcgccctccgagcccctccaaagccccggccgctgcccgagcaggtcaagaagaac
agtgaccccatctctctgttacaggaacttagcataggcagttcaaacagtagcaatggc
tattacacgtattttaaataa
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