Carassius gibelio (silver crucian carp): 127952035
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Entry
127952035 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1-like isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04120
Ubiquitin mediated proteolysis
cgib04137
Mitophagy - animal
cgib04144
Endocytosis
cgib04340
Hedgehog signaling pathway
cgib04350
TGF-beta signaling pathway
cgib04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127952035
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
127952035
04350 TGF-beta signaling pathway
127952035
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127952035
04137 Mitophagy - animal
127952035
09144 Cellular community - eukaryotes
04520 Adherens junction
127952035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgib04131
]
127952035
04121 Ubiquitin system [BR:
cgib04121
]
127952035
03029 Mitochondrial biogenesis [BR:
cgib03029
]
127952035
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
127952035
Membrane trafficking [BR:
cgib04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
127952035
Autophagy
Mitophagy
Other mitophagy associated proteins
127952035
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
HECT type E3
127952035
Mitochondrial biogenesis [BR:
cgib03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
127952035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
127952035
NCBI-ProteinID:
XP_052406246
LinkDB
All DBs
Position
A3:complement(21382992..21416501)
Genome browser
AA seq
775 aa
AA seq
DB search
MHSPHISVARFYTFFSPLEASVLGLSWRKFVGYFVGVMSNPGTRRNGSSIKIRLTVLCAK
NLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDPKWNQHYDLYIGKTDSITISVWNH
KKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNASDSDAVRGQIVVSLQTRDRI
GSGGPVVDCRGLVENEGPVFEDSGPGRPLSCFMEEPMPYTDPTGAAGGGNCHALESPNQE
QRLQAQRIRNQDSRGHAHTPQNRPHGHQSPDLPEGYEQRTTVQGQVYFLHTQTGVSTWHD
PRIPRCTNISLRDLNSVSCEELGPLPPGWEIRSTVSGRIYFVDHNNRTTQFTDPRLHHIM
SQQSQGKESSQPLPVQMEVGMEEGEGELPVRYERDLVQKLKVLRHELSLQQPQAGHCRIE
VSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGL
FQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYINGGFTLPFYKQLLGKP
IQLCDLETVDPELHKSLVWILENDITSVLDHTFCVEHNAFGKFLQHELKPNGKNIPVTEE
NKKEYVRLYVNWRFMRGIEAQFLALQKGFNELVPQHLLKPFDNKELELIIGGLGKIDLSD
WKANTRLKHCVADSNIVKWFWQAVESFDEERRGRLLQFVTGSTRVPLQGFKALQGSTGSA
GPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEETCGFAVE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcccacatattagcgtagcgcgtttttatacgtttttctctccgcttgaagcg
agcgtcttgggtttatcctggagaaagttcgttggttattttgtgggagtgatgtcgaat
cctgggactcgaaggaacgggtcaagcatcaaaatccgactgacagtattatgtgccaag
aatctggcaaagaaagacttcttccgtttgcctgatcctttcgccaaagtggtggtggat
ggctcgggtcaatgtcactctacagacacggtcaaaagcacattggaccccaagtggaat
cagcattacgacctgtatattgggaagaccgattccatcaccattagcgtatggaaccat
aagaagatccataagaagcagggtgcgggtttcttaggctgtgtgcgactcctgtccaat
gccatcagcagactaaaagacacaggctaccagcgtttagacttatgcaagctgaacgca
tctgacagtgatgctgtccgtggacaaattgttgtgagtctgcagaccagagaccgaatc
ggcagtggagggcctgtggtcgactgtagaggactggtagagaatgaagggccagtcttt
gaagactcggggcccggacggcctctcagctgcttcatggaggagcccatgccatacacg
gatccgacaggagccgctggcgggggcaactgccatgcacttgagtcaccaaatcaagag
caacggctccaagcacaacgcatcagaaaccaagattcccgagggcacgcacataccccc
caaaatagaccacacggacaccagtcccccgacctccctgagggctacgagcaaaggacc
accgtgcagggccaagtctattttctgcacacacagactggcgtgagcacctggcatgat
cccagaataccccggtgtaccaacatctctttaagggatttgaacagcgtgagttgtgag
gagctgggccctctgccacccggctgggagatcaggagcactgtgtcaggacgaatttat
ttcgtcgaccataataatagaaccacgcaattcactgaccccaggttacaccacatcatg
agccagcagtctcaggggaaggagtcgagccagcctctgcctgtacagatggaggttggt
atggaggaaggtgaaggggagctaccagtgcgctacgagagagatctggtccagaaactt
aaagttctccgccatgagctctccctgcagcagcctcaagctggccactgccgcatagaa
gtgtcccgtgaggagatctttgaggagtcttatagacagatcatgaagatgagacccaaa
gacctgaagaagcggctgatggtgaagttcagaggagaggaggggctagattacggtgga
gttgctagggaatggttatatctcctctgccatgagatgctgaatccatactacggtctg
tttcagtactccaccgataacatctacacactacagatcaacccagactcgtccatcaac
cctgaccacttgtcttacttccactttgttgggcggataatgggtctggctgttttccac
gggcactacatcaatggaggcttcaccttgcccttctacaagcagctcctgggaaagccc
atccagctttgtgaccttgagactgtggacccagagctgcacaagagcctcgtctggata
ctagagaatgacatcacatctgttttggaccacaccttctgcgtagaacataatgctttt
ggcaaattcctccaacatgagctgaaaccaaacggcaagaacatcccagtcacagaggag
aataagaaagaatatgtgaggctgtatgtcaactggagattcatgcgaggcattgaggcc
cagttccttgctctgcagaagggcttcaacgaactcgtaccacagcatctgctcaagcct
tttgacaacaaggaacttgagctgatcattggtggtctgggcaagatcgatctgagcgac
tggaaggccaacacacggctgaagcactgtgtggctgacagtaacatagtgaagtggttc
tggcaggcggtggaatcgtttgacgaggagaggagaggcagactgctacagttcgtcaca
ggctccacacgcgtccctctacaaggattcaaagcactgcaaggttctacaggttctgca
ggaccaagactcttcactattcatttaattgatgccaacaccgacaacctgcccaaagcc
cacacatgcttcaaccggatcgacatcccgccttacgagtcatacgagaagctctacgag
aagctcctgaccgccgtggaggagacgtgtggctttgcagtggagtga
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