Carassius gibelio (silver crucian carp): 127952076
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Entry
127952076 CDS
T08819
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127952076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127952076
03041 Spliceosome [BR:
cgib03041
]
127952076
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127952076
Spliceosome [BR:
cgib03041
]
Complex B
Other components
Prp19-related factors
127952076
Complex C
127952076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
TPR_1
DUF4515
Motif
Other DBs
NCBI-GeneID:
127952076
NCBI-ProteinID:
XP_052406310
LinkDB
All DBs
Position
B3:11115701..11123734
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AA seq
849 aa
AA seq
DB search
MATRNGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKPVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPSYEEVNNCHERALVFMHKMPRVWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENLVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEEGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPIKATGRPHTLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHTYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYSKTIYLLYAKLEEE
YGLARHAMAVYERATGAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNASGTVSDLAPGQSGVDDMKMLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacgtaacggaaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaacccgtattcagtcaagtgctggatgcgatacattgagcacaaa
caaagtgctcagaaaccagtgctcaatatgatctatgaaagagctttgaaagagctacct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaaa
tgtgtcacagatccatcatacgaggaggtgaacaactgtcacgagagagcacttgtgttc
atgcataagatgccgagggtgtggatcgactactgtcagttcatggtgtctcaatgcaaa
atcacacggagcagacggacgtttgatagggcgttaagagcactacccattacccagcat
cctcgcatctggcccctgtatctccgctttgcccggaacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagtcggacgtctggatgaagctgcgcttcggctggcggctgtggtcaat
gacgaaaaccttgtttcgaaggagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccagacaaggtgacttcactgaacgtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaaactctggtgctctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatacgaggaggccatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagctatgcgcagtttgaggagagc
atgattgctgccaagatggagaccacgtctgaactgggacaagatgaagaaggtgacatt
gacttggagttgcgattggcccgttttgagttgctgataactagacgaccgcttttacta
aacagcgtgctgctgcgtcagaaccctcacaatgttcacgagtggcacaagagagtcaag
ctctatgagggccaaccacgacagatcatcaacacgtacacagaagctgtgcaaacgata
gatcctattaaagccacaggaagacctcacacgctctgggtgtccttcgccaggttctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgcggcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaagaaaagcaacagcgattccagcgaga
aaagcagagtatttcgattcttcagaaccagtgcagaatcgagtatacaagtcgctgaaa
gtgtggtccatgcttgcagacttggaagagagtctcggcacattccagtccacaaaggca
gtgtacgatcgcattattgatctccggatcgccacacctcagatcatcattaactatgcc
atgtttcttgaagaacacacctactttgaggatagtttcaaggcgtacgagcgtggcatt
gcccttttcaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatt
gaccgttatggaggaaaaaagctggagagagcgcgagatctgtttgagcaagcgctggat
aggtgtccgcctaaatactccaaaacgatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactggagctgtagagcca
gaggaacgacatcagatgttcaacatctacatcaagagggccgcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgtctgcgcttcgctgacatggagagcaaacttggggagattgaccgagcgaga
gccatctactcttattgctctcagatctgtgacccgaggttgaccgctcatttctggcaa
acctggaaggagtttgagatacgccacggtaatgaggacacaatccgtgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggctaccaccaatgctagcggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgatatgaagatgctggagcagaaggctcaacagctcgccgcagaggcagaacag
gacaaacccaaacctaaagacaagatccttttcgtcaggagcgacacctctcgcagtgaa
ctcgctgaactggctaaacaagctaatccagatgagattgacattgatgatgatgaagat
gaggatgcagaggatggggaaccagatgaggtgcaactggagcagaagtctgtccctaca
gctgtctttggaggactaaaggatgactaa
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