Carassius gibelio (silver crucian carp): 127952468
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Entry
127952468 CDS
T08819
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127952468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127952468
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127952468
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127952468
Complex B
127952468
Complex C
U2 SnRNP specific factors
127952468
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127952468
NCBI-ProteinID:
XP_052406878
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All DBs
Position
B3:20494555..20502594
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AA seq
894 aa
AA seq
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MNWSKGGPSGKRGFGFGGFSLASGKKEEPRPPPKTHSAFGASGPSGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFKSGGGGGGGSDSEDDPLDAF
MAEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEEDEE
EVDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFFIEHEELSSLTEAGVVELRKK
LNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAK
TGSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLRSV
AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFE
YQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVL
HSGQEKWGWLTRRLVEFTSAGSVLIFVTKKTNCEELATNLNQEGYSLGLLHGDMDQSERN
KVIADFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGLA
YTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKPNIGGGGL
GYRERPGLGSESTERSSSCGSPLGNYEAFKPSTGAMGERMSALKQAFQAQYKNHFVAASG
VPPKLTTKSSSSSGWTSAGSLSSLPSGSGEGPDGTHISYLPSSSSSFPSMQPPPPLSSGT
KMSGFSSTGSLSSISDSSSSSKEGSCSDRNADDRGHRGDCYRHSGRQSGGDRDRYAERDR
HSDRDRHSDSRNSEGSHKDREGRSERDDGESSATHKDSFAVPDPPKRKKSRWDN
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggaggcccgagtggcaagcggggctttggattcggggggttctct
cttgcgagtgggaagaaagaagaacctcgtcctcccccgaagacccactctgcttttgga
gcttcaggaccatcgggtggatatggcaagaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaacgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatataccggccgagaactctcccactagacagcagttc
aagtctggaggaggaggaggaggaggctcagacagcgaggatgaccctcttgatgctttt
atggctgaggtggaggaccaagcagcaaaagacatgaagaaacttgaagaaaaggaaaaa
gagaaaaagttagccaagggtatacgggatgacatcgaagaggaggatgaccaagaagca
tattttcgttacatggcggaaaacccaacagctgggctgacccaagaggaagatgaggaa
gaagtggactatgacagcgatggcaaccccattgctcctactaccaaaaagattatcatg
cctctgccccccatagaccactcggagattgactatcctccctttgagaagaacttcttt
attgagcatgaggaactcagcagtctgactgaggccggagtggtggaactgagaaagaaa
ctcaatctgaaggtttcaggtgcagcccctcctaaaccagccaccagttttgcccacttt
ggatttgatgagcagctcatgcaccagatccgtaaatctgagtacactcaacccacaccc
atccagtgccagggtgttccaatagctttgggtggcagagacatgattggcattgccaaa
actggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatggaccag
aaggagctggagcagggagagggacccattgctgtgatcgtctgccccaccagagagctc
tgtcaacagatccattctgaatgtaagcgctttgggaaagtgtatggtctccgctcggtg
gcagtatatggaggcggcagtatgtgggaacaagccaaagctctacaggaaggagctgaa
attgttgtctgcaccccaggtcgcctgattgatcacgtgaagaagaaggctacatctctg
cagcgagtgacctacctggtgtttgacgaagctgatcgcatgttcgacatgggctttgaa
taccaagtgagatccattgctagccatgtcagacctgatcgacagactttgttattcagt
gcaacatttcggaagaaaattgaaaagctggcgcgagatattttggttgaccccattcgt
gttgtgcagggagacataggagaggctaatgaagatgtcactcagatagtggaagtgctg
cattctgggcaggaaaagtggggttggctgacacgcaggctggttgagttcacctcagct
ggctctgtgctcatctttgtcactaaaaagactaactgtgaggaactggctacaaatctc
aatcaggaaggttatagcctagggctgctgcatggagacatggatcagagcgagaggaac
aaagtcatcgctgattttaagaaaaagaatctgcccatattagtagctactgatgttgcc
gctcgagggttggatatcccatctatccgtacagttgtgaactatgatgtagcacgagac
attgacacacatacacatcgaattggtagaacaggtcgtgcaggagagaagggtttagct
tacactctgctcacctctaaagacacttcatttgctggtgacttggttagaaatttagag
ggagcaaaccagagtgtttcaaaggagctgatggacctggcaatgcagaatccctggttc
aggaagtcccgctttaagggagggaaagggaagaagccaaatattggaggtggaggcctg
ggttacagagagagaccaggccttggatctgaatccactgagcgcagtagtagttgtggt
tctcctcttggtaactatgaagccttcaaaccctccactggggccatgggagagcgtatg
tctgccctgaagcaagcatttcaggctcagtataaaaaccactttgtggcagcatctggt
gttcctccaaaactcaccacaaagtccagcagctcctctgggtggaccagtgcggggagt
ctaagttctttgccttcaggatcaggagaggggcctgacggaactcacatctcctacttg
ccatcgtcctcttcctcatttccctccatgcagccaccccctcccctcagctcgggcacc
aaaatgagtggcttcagcagtacaggctccctgagctcaatttcagactctagctcttct
tcaaaagagggatcctgtagcgataggaatgctgacgacaggggtcatcgtggagattgt
tatcgtcacagtggcaggcaaagtggtggagaccgtgatcgctacgcagagagggaccgt
catagtgacagagatcgtcacagtgatagtcgaaacagtgaagggagccataaggacaga
gagggacggtcagaaagagatgacggcgagagttcagcgactcataaagacagttttgca
gttcctgatccccccaaacgtaagaaaagcagatgggacaattaa
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