Carassius gibelio (silver crucian carp): 127952676
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Entry
127952676 CDS
T08819
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cgib01001
]
127952676
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
127952676
Enzymes [BR:
cgib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127952676
Protein kinases [BR:
cgib01001
]
Serine/threonine kinases: Other
TAF1 family
127952676
Pattern recognition receptors [BR:
cgib04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127952676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
nSTAND_NTPase5
LRR_8
AAA_25
Pox_A32
TsaE
ABC_tran
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
127952676
NCBI-ProteinID:
XP_052407288
LinkDB
All DBs
Position
B3:23307715..23320232
Genome browser
AA seq
1154 aa
AA seq
DB search
MSWSRGCCPVMVPFEEVLFQVRKALQVSPSLLHELLRELHEARVFSTQYYQSLYKDGDIG
EQRLCEVFLNNGEDLARRLSLPIWQNWDISQSILDLALSKEEDLVPSDAEWQDIVPDLMS
ELLPDNVILKYLESPESIEDDFDPTVLDNFPGDIGTTCTPIPEDATFLDGVPPKKPKVVH
KRRRKRGHSTVNRKATVCPESPSNGSTPTIVPESSFHLSSTPFQHVLRIPFSPPLLPPNG
GSPLQIIQTIGPYTPPLFGTVVPTGSTYVIVSPQCVSPGAQILPLSPATGTVAPPELTGS
VLPVGSSSDSACQGSPTVDPHSPTKDLQKHNDSTSPKSEKKLRPAAPECVKDYKHHTQSY
MRDVCCSMRGNLGMESHYVDAHLVQRKLLIKSGKNANKCLEKELVVLSDSERKRAKLDRS
QLFHNSDSKPKQSFALLGKAGAGKTTFIQRLCLDWASGSLPQFQFVFLLNCKILDLTKST
YSLKGLLLDLSVSPRCEDSDSVFKHILSCPDEVLIIFDSFDHIKDFEGLLQSPAKSHTNT
KYTIKQLFSGLFQKEILSGCTLLIATRPKDVLNQVLRKMDSLLELCGFSPEDIELYTSKY
FGDNTSLQESALKQIKNDRYIFSLCSNPLLCWTTCFLLEHQESCSDLPSTLTDLYQRVTS
KHLQLASLENSSLCKNRKHLDIPQLCKMAWEGFKNHDTRLNPASSAEQLDCALKSGILTS
YKTPEGQENHFADLFTQNLLSAVHLVQSKQVNEKMVVANSVVHQKKRKVQGESQDVLQRF
VTGLVFQKPPDGVSILDSSVNIKAKRKAVETHLESMKPNDLVPARLLELFHCVYETGSAK
FAKLLLKNLPDNLSFYGTQLCPSDVYVICHLLQYASALKRTFSINLQDTCIPISGLKELV
GLKCIKAFWSHTADTIGLWEDLHQSNDELNLKSAIEKFTLHPFKATEGYHIESLPVLVQI
HREKKLPMSESVSALDEGVPALRHLQRLEFELGVQNGPELFPKLVEVLPSLQSLQHLDLE
KNQIGDSGAEKLAGVLHFLECLKLLNLSQNLIGDAGVEKLAKALAKVPSLQSLSLYGNAI
ADIGAEHLALALPDMNFLLDLNVAFNKFTDLGATKLGAALKNCTGMKSLELWNDCIPYGV
FEHLRLQDPRIRSL
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgagctggtctcgcggctgctgtccagtcatggttccctttgaggaggtactgtttcag
gtgagaaaagctttacaggtcagcccaagcctactgcacgagcttctccgagagctacac
gaggcccgcgtcttctctacccagtattaccagtctctctacaaggatggggacattgga
gagcagcgtttgtgtgaagtctttctcaacaatggagaagatctggccagaagactctct
ttgccaatctggcagaactgggacatcagccaaagcatcttggatttggcactctccaaa
gaggaagatttggttccttctgatgctgaatggcaagatattgtcccggacttaatgtct
gaactcttacctgataatgtcatcttaaagtatctcgagtcgcctgagtctattgaagat
gattttgatcccaccgtccttgataactttccaggtgacataggcacgacctgcacgcca
ataccagaagatgctactttcctagatggagtgccacccaaaaagccaaaagttgtacac
aaacgccgcagaaaacgtggccattcaactgttaatagaaaagctacagtgtgcccagaa
agtccctcaaacggaagcacacccaccattgtccctgagagtagtttccatctaagctca
accccgttccagcatgtgcttcgtattcccttcagccctcctcttctgccccctaatgga
ggttcaccactacaaataatccagacaattggcccttatacgccccctctgttcggcact
gtggttccaacagggtctacatacgtgattgtatcgccccagtgtgtgagtccgggcgct
cagatacttcctctttcacctgccactggcacagttgcgccgccagaactcactggttct
gtacttcctgttggctcatcctcagacagcgcatgccagggctcgccaacagtagaccca
cactcccctacaaaagacctacaaaaacacaatgattccacctctccaaaaagcgaaaag
aaactccgcccagcagcaccagaatgtgtgaaggactacaaacatcacacacaatcctac
atgagagatgtctgctgctcaatgcgtgggaacctgggaatggagtcgcactacgtggac
gcacatctggtccagagaaaactccttatcaaatctggtaaaaatgcaaacaagtgtctg
gagaaggaactggtcgtccttagtgactcagagcgaaagagggcaaagctggacagaagc
cagttgtttcataacagtgattccaaaccgaaacagtcatttgctctcctgggaaaagcc
ggagcggggaaaaccacgttcattcagcgtttatgcttggactgggcgagcggtagcctg
cctcaatttcagtttgtttttttgttgaactgtaaaatcttagaccttacaaaatcaacc
tacagcttgaaaggtttactgttggatttgtctgtgtctcctcgctgcgaggactcagac
tctgtgttcaaacacattctgtcctgccctgatgaagttctcattatcttcgacagcttt
gatcacattaaagactttgaagggcttctccagtcccctgccaaatcacacacaaacact
aaatacacaatcaaacagctattttccggtttgttccaaaaggaaatcctctcgggctgc
acgctactcatcgccacgaggcctaaagacgttttaaaccaggtgctgcgaaaaatggac
agccttttggagctttgtggcttctctcctgaggacattgagttgtacacgtcaaaatat
tttggggataatacttccctccaagaaagtgcactaaaacagattaagaatgacagatac
atattcagtttatgctccaacccgctgctttgttggactacctgtttcctgctcgagcac
caagaaagctgcagtgatttgccttcaaccctcacggatttgtaccaaagagtgacctcc
aagcatctgcaactagctagccttgagaatagctcgttgtgtaaaaacagaaaacatctg
gacatcccacagttgtgcaaaatggcatgggagggcttcaagaatcatgatacacgtcta
aaccctgccagttctgcggagcagctggactgcgctctaaaaagtggcatactcacgtcc
tacaaaacgcctgagggtcaggaaaaccactttgcagaccttttcactcagaacctcctg
agcgctgtgcatctggtacagtccaaacaggtgaatgagaaaatggtggtagcaaacagc
gtagtccatcagaagaagcgaaaggttcagggagagtcgcaggacgtgctgcagaggttt
gtcaccggcttggtcttccagaagccccctgatggagtcagcatcctggacagcagtgtc
aacattaaagccaaaagaaaggctgtcgaaacccatctggagagcatgaagccgaatgat
ttggttcctgccaggttactagaactgtttcattgcgtttacgagaccggcagcgccaag
tttgccaaactgctgttgaagaacctgcctgacaatctgtcattctatgggacgcagctt
tgcccatcggatgtgtatgttatatgtcacctccttcaatatgccagcgcactgaagcgg
accttctccattaacctgcaagacacatgcattcccatcagtggcctgaaagagcttgtg
ggactcaaatgtatcaaagcattctggtcacatacagcagacaccattggcttatgggag
gacttgcatcaaagcaatgatgaactgaacctgaaaagtgccattgagaaattcaccttg
cacccattcaaggcaacagaagggtatcacatagagagcctgcccgtccttgtccaaatt
cacagagagaagaagctaccaatgagtgaatctgtgtctgcactggatgaaggtgtgcca
gccctccggcatcttcagagactggaatttgagcttggagtccagaacggtcctgaactt
ttccctaaactcgtagaggtcctgccttctctgcagtccctccaacatctggaccttgag
aaaaaccaaataggagactctggagctgagaagctagctggcgttttacatttcttggaa
tgtctgaaattgctgaatctgtctcaaaacctcatcggagatgcaggagtagagaaacta
gctaaagctttggcaaaagtcccttctctacagagccttagcctttatggaaatgcaatt
gctgacattggagctgaacatctggccttggctttaccggacatgaatttcctgctggac
ctgaacgttgcgttcaacaagttcacagaccttggagctacaaagcttggtgctgctctg
aaaaactgcacaggaatgaagtccctggagctgtggaatgactgcatcccatatggagtt
tttgaacacctgcgtcttcaagatccacggataagatcactttga
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