Carassius gibelio (silver crucian carp): 127952797
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Entry
127952797 CDS
T08819
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127952797
03015 mRNA surveillance pathway
127952797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127952797
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127952797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
127952797
NCBI-ProteinID:
XP_052407522
LinkDB
All DBs
Position
B3:27575090..27591470
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AA seq
760 aa
AA seq
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MADRRRRRRRASQDSEEEDESASGSESGGSLSGVRKTRGEEPVPVESPAERVSTKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEEEEGEHFSDEEASRPAAEPKPSADAPTE
ELGEEEERDGGVKEVKSDEKGNLAGERQSGDGQESTEDPENKSGSKGEKLDDDEDRKNPA
YIPRKGLFFEHDVRGQATEEERPKGRHRRLWKDEGRWEHDKFREEEQAPKSRDELIALYG
YDIRNGTGASDGRSYRPRKPRYAGSPSREPRRHRDGEKSVRTTWQAPPPGHRNTPQMVPL
QSGTPPAPPAASKPSGRPATQPPQRSFQSSRFSSAPHRTEGQRHSKPSLDGPPPRGVQPQ
PVEGERGPRLRGRGSHAVHAERSPAVVVEDVRSEEDEEEGEIPTATTTYTAHHYRTERER
VPAPRKQESGPAMEGGSAAGTVRESSPPQERPVEKKSYSLARRATRTRPSDLSKQASLDE
SSPAVQQAPAAAKSESWQEQSDAGTQAGLTGLDQDLARLSLAGQNWAQSPPSYLQAEMRG
IRSSMHMTGGPPQYGNMEDMQGVGGGRAKRYSSQRQRAVPEPAPMHIGVMEGHYYEPMSF
QGPIYTHGESPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPMPNPALYAAPPVSI
SPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQAQVQVYGGVTYYD
TVQQQALPKRSPPRRSSHPVTVRPPPPEDQSRKAAEEIHS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagcgaggaggaggacgag
tccgcttcgggctccgagagcggggggtcgctgtccggcgtccggaagactcgcggagaa
gaacccgtgccggtggagtcgcccgcggagcgcgtgagcaccaagagagacgacgagtcg
gagtgtgaaagtgaagatggtgttggtgaagcggtcttatcggactatgacagcgctgat
ctggaggagaacgggtcgcacacggagggaggagaggaggaggagggagagcatttcagt
gatgaagaggcctcacgtcctgccgcagagccgaagcccagtgcagacgccccgacagaa
gagctcggtgaagaggaggagagagatggaggggtcaaggaagttaaatctgatgagaag
ggcaatctagctggggagcgacagagtggggacggacaggaaagcacagaggaccctgaa
aataaatcgggcagcaaaggcgagaagcttgatgatgatgaggacaggaagaatcctgcc
tacatcccccgaaaaggccttttctttgagcatgacgtgagaggccaggctacagaggag
gagaggccaaaaggcaggcacaggaggctgtggaaggacgagggccgatgggaacacgac
aagttccgcgaagaggagcaggccccaaaatcgcgcgacgagcttattgctttatatggt
tatgacatccgcaatggcacaggggcaagtgacgggcgatcgtaccgccctcgaaaaccc
agatatgctggttcacccagtcgggagccgaggcgtcaccgtgacggtgaaaagtcagtt
cgtacaacatggcaggcgcctccacctggccaccgcaacacccctcagatggttccccta
cagtcaggcacacctcctgctcctcctgcagcatccaaaccctccggccgacccgcgact
cagcctccacagcgcagcttccaaagcagtcgcttctcgtcggccccccacaggacagaa
gggcagagacactcgaagcccagtctagacggcccgccaccccgaggagtgcagccacag
cctgtagagggcgagaggggcccgaggctcaggggccgaggctcacatgctgttcacgcc
gagcgtagcccagccgtggtggtggaggacgtccgcagtgaggaagatgaggaggagggc
gagattccaacagctacaactacatacaccgctcaccactacaggacggagagagagagg
gtcccggctccacggaaacaagagtctggcccagcgatggaagggggcagtgcagccggt
acggtgcgagaatcgtctcctcctcaagagaggccggtggaaaagaagtcgtactctctt
gcgcggagggcgacgcgaacgcgaccgtctgatctcagtaagcaggcgtcattagatgag
tcttcgcccgcggtccagcaagccccggcagcagcaaagagcgagtcgtggcaagagcag
agcgatgctggaacacaagctggactgacaggcctcgaccaggacctggcccgactcagc
ctggcggggcaaaactgggcccaaagcccaccctcctacctgcaggccgagatgagaggc
attcgtagctccatgcacatgacaggaggccctccgcagtatggaaacatggaggatatg
cagggtgttggcggtggccgggctaagcgctattcatcacagcgccagagggcagttccc
gagcctgcacccatgcacattggagtcatggagggccattattatgaacccatgtctttc
cagggaccaatctacacgcacggggaaagcccagcagccctgccccctcaaggcatgctg
gttcagcctgagatgcacctgccacaccccactcaccccggacacccaggcttgcacccg
caccagtcaggaggtcccatgcccaatccagctctttacgccgccccgcctgtttctata
tcacctgggcaaccgcctccacagcagctgctgcccccacccttctacccccctccaggt
gtgatgacctttgggaacaccaactacccgtaccctgccggagctacgctacctccaatg
taccccaacccccaggcacaggcacaggtacaggtctacggtggtgtgacgtactacgac
acggtacagcagcaagctctgcccaaacgctccccgccccgacgctcctctcatcccgtt
acagtcagacctccccctcctgaggaccagagcagaaaggccgctgaggagattcactcc
tag
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