Carassius gibelio (silver crucian carp): 127952882
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Entry
127952882 CDS
T08819
Name
(RefSeq) DNA polymerase delta catalytic subunit-like isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03030
DNA replication
cgib03410
Base excision repair
cgib03420
Nucleotide excision repair
cgib03430
Mismatch repair
cgib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127952882
03410 Base excision repair
127952882
03420 Nucleotide excision repair
127952882
03430 Mismatch repair
127952882
03440 Homologous recombination
127952882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgib03032
]
127952882
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127952882
Enzymes [BR:
cgib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
127952882
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
127952882
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
127952882
MMR (mismatch excision repair)
DNA polymerase delta complex
127952882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
127952882
NCBI-ProteinID:
XP_052407695
LinkDB
All DBs
Position
B3:24317446..24328722
Genome browser
AA seq
1105 aa
AA seq
DB search
MEFKRRIGGPAVGGASQAKKGKMNTDWEDSPSQFEEELALFDEMEMEAESGEGQAGHDVV
PVGELFSTDLNPRWKRPHAPPLQPNSDTLIFQQIDLDYYLGSAVAGMPGQVQGKVPIVRM
FGVTDSGNSVCCHVHGFAPYFYVPAPHGFTNAHLAEFQRELNSAVLKDMRSNKDNIAVTV
LAVDITKKESMYHYHGNKPLDFLRITMAMPRLIAPAKRLLEQGFKFATFATQSYQAYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYRLREERGVGQTDSKYPGKVSLCQYEVDVAWNHLI
SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEPEIDPVIQIASMVQRQGEKEPFIRTVFT
LQSCASIVGSQILCFTQEKLLLQSWAEFVRTVDPDIITGYNIQNFDLPYLLNRAATLKVS
LFPYLGRVWGCKSVLRDSTFQSKQMGRRENKIVNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVRTETGEDYTGATVIEPEKGYYSI
PIATLDFSSLYPSIMMAHNLCYTTLLQKNQVDKLGLTPEDFIKTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESRYTISNGYQADAKVVYGDTDSVMVKLGVATVQEAMNLGK
EAADWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSNAEHHDKMDCKGIETVRRDN
CPLVANLINTCLQNILIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCR
AVLKTDVAVCDFCKKRESELYQKEIAHLSTLEENFSRLWTQCQRCQGSLHEEVLCTSRDC
PIFYMRKKVQKDLDDQEKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaaaggcgcattggaggccctgcagtgggtggggcttcacaggccaagaag
gggaaaatgaacacagactgggaggatagtccctcccagtttgaagaggaactcgctcta
tttgatgaaatggaaatggaggcggagtcaggggaggggcaagcaggtcatgatgttgtt
ccagtgggtgaattattctctactgatcttaatccacgttggaaacgacctcatgcacct
cctctacaaccaaactcagacacactcattttccagcagatagacctggattactacttg
ggatctgcggtagcaggaatgcccgggcaggtacagggcaaagtgcccatagtgcgcatg
tttggtgtgacggacagtggaaatagcgtgtgctgccatgtccatggattcgccccgtat
ttctatgttcctgccccccacggttttacaaatgcacacttggctgagtttcagagagag
ctgaactctgctgtattaaaggatatgcggtccaataaagacaatatagcagtcactgtt
ctggcagtggacatcaccaagaaggaaagcatgtatcactatcatggaaacaaacctctt
gatttcctgcgcatcaccatggcaatgccgcgtctgattgccccggcgaagcgtcttctg
gagcagggttttaaatttgccacctttgccacccagagctaccaggcctatgaagccaac
attgactttgagatcaggttcatggtggacagtgatgtggtcggttgctgctggattgag
cttcctaaaggaaagtacaggctgagggaggagaggggcgtaggacagacggactcaaaa
tatccaggaaaggtgtcgctgtgtcagtacgaggtggatgtggcctggaatcacttgatc
agtcatccagctgaaggagagtggcagaggatcgctcctctcagagtcctcagctttgat
attgagtgtgcaggaagaaaaggtgtgtttccggagccagagattgatcctgtgattcag
atcgcctctatggtgcagcgtcagggagagaaggagccctttatccggacggtcttcacc
ttacagagctgtgccagtatcgtgggctcccagattctctgctttactcaagagaaactg
ctgctgcagagttgggctgagtttgtaaggacagtggaccctgacatcatcactggctac
aatatccagaactttgaccttccgtacctcctcaacagagctgcaaccttaaaggtgagt
ttgttcccgtatctgggccgtgtgtggggctgtaaatcggtcctgagagactctactttc
cagagcaaacagatgggccgcagagagaacaaaatagtcaatatggagggacgtgtgcag
tttgacctactacaggtgttgctgagggattataaactacgctcttacacactgaacgcc
gtcagtttccattttctgcaggagcagaaggaggatgtgcagcattctatcatcacagac
ctacagaatgggaatgagcagacccgcaggcgtttggctgtgtactgtctgaaggatgca
tatctgcccctgcgcttgctgcagaagttaatgtgcgtcattaattacatggaaatggcc
agagttaccggggtgcccctgacatacctgctctctcgtggacagcagattaaagtggtt
tcacagctcctgagacaggctatgaagcaggatctggtgatgccagtggtgaggacagag
accggagaggactacactggagccactgtcatagaaccagagaaagggtattacagtatt
cctatagcgactctggatttctcctcactgtatccctccatcatgatggctcataattta
tgttacactactctcctgcagaaaaaccaggttgacaaactcggtctgactccagaagat
ttcatcaagaccccgacaggagatctgtttgtgaagagctctgtgaggaagggccttctc
cctgagatcctggaaaacctgctgagtgccaggaaaagggcgaaggcagagctgaagaaa
gagacagacccctttaaaaagcaggtgctggacggaaggcagttggctttgaagatcagt
gctaactccgtgtacgggttcaccggggctcaggtgggcaagctgccctgtctggagatc
tctcagagcgtcactggctttggtaggcagatgattgaacagaccaaacagcttgtggaa
tcaagatacacaatctccaatggctaccaggcagatgcaaaggtggtgtatggagacact
gactctgtgatggtgaaactaggcgtggccacagtgcaggaagcaatgaatctgggaaag
gaggctgccgattgggtttcctcccacttcgttccaccaatcaaattagagttcgagaag
gtgtattacccatatctgctgatcaataagaagcgttacgccggcttgtatttctcttct
aatgctgaacatcatgataagatggactgcaaaggaattgagacggtcagacgagacaac
tgccctctagtggccaaccttatcaacacatgcctccaaaacatcctcattgacagagac
cctgatggagcggtggctcatgctaaagaggtgatctctgaccttctgtgcaaccgcatt
gacatcagtcagctggtcataactaaagagctcacacgcaccgcacaggagtatgccggc
aaacaggcccacgtcgagctagcagagaggatgcggaagcgtgatgccggtagcgctcca
aacctcggagatcgagtcccgtacgtcatcatcaaagcagcgaagggagtggcagcatat
atgaagtcagaggaccccatctatgtgctggagaacaacatccctatagacacacagtac
tacctggagcagcagctgtccaaacctttactgcgcatctttgaacccatactgggcgag
accaaagctgagagtgtgttgctgaagggcgatcacactcgctgtaagacggtcttgaca
tcgagagttggtggtctcatggcttttgctcagaaacgaagcacatgcattggctgccga
gctgtgctcaaaacagatgtggctgtatgtgacttctgcaaaaagagagagtcggagctt
tatcagaaagagatcgctcatctgtccactctggaggagaatttctctcgtctgtggact
cagtgtcagcgctgtcaagggtcactgcatgaagaagtgctgtgtaccagtcgagactgc
cccatcttttacatgaggaagaaagtgcagaaggatttagacgatcaggagaagctcgtc
tcccgttttggttggtga
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