Carassius gibelio (silver crucian carp): 127952992
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Entry
127952992 CDS
T08819
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127952992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127952992
03041 Spliceosome [BR:
cgib03041
]
127952992
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127952992
Spliceosome [BR:
cgib03041
]
Complex B
Other components
Prp19-related factors
127952992
Complex C
127952992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
Tcf25
ATG1-like_MIT2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
127952992
NCBI-ProteinID:
XP_052407849
LinkDB
All DBs
Position
A3:complement(24490804..24496827)
Genome browser
AA seq
848 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKPVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDLAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFAHNLPLPETAIRVYRRYLKLSPENAEEYID
FLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVETEEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKMLEQKAHQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDAEDGEPEEMQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcggaaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaaatgctggatgcgttacattgagcacaag
caaaatgcccagaaaccagtgctcaatatgatctatgaaagagcattaaaagagctacct
ggcagttacaagctgtggtacaactacctgagagagagaagaaaacaggtgaaaggcaag
tgtgtcacagatctagcatacgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagcagacggacgttcgatagggcgttaagagcgctacccattacccagcat
cctcgtatctggcccctgtatcttcgctttgcccataacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtctcctgagaatgcagaggaatacattgat
ttcctgcgttcagttggacgtctggatgaagctgcgatccggctggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgaactctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaacgtgggagcgattatccgc
ggaggtctcactcgttttactgaccagctcggcaaactctggtgttctctggctgattac
tacatccgcagtggacattttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcagtttgaggagagc
atgattgctgccaagatggagaccacgtctgaactgggacaagatgaagatggagacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacgaccacttttactg
aacagtgtgctgctgcgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctacgagggccaacctcgacagattatcaacacgtacacagaagctgtgcaaaccata
gatcctgtcaaagccacgggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctaggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcaattccatccaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtttataagtccctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgccactcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcata
gccctctttaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatc
gaccgttatggaggcaagaagctggagagagcacgcgatctgtttgagcaagcgctggat
gggtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tatggtctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtagaaaca
gaggaacaacatcagatgttcaatatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcctgcgctttgcggacatggagagcaaactcggggagattgacagagcgaga
gccatctactcctactgctcacagatctgtgatccaaggatgaccgctcatttctggcaa
acatggaaggagtttgagatacgccatggtaatgaggacaccatccgcgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaggtcaacttcatgtcctctcagatg
ctcaaggcaaccaccaatgctactggaacagtgtcagatcttgctcctgggcagagcggg
gtggatgacatgaagatgctggagcagaaggctcatcagctcgctgcagaggctgagcag
gacaaacccaaacctaaagacaagatcctcttcgtcaggagtgacacctctcgcagtgaa
cttgccgaactggccaaacaagctaatccagatgagattgacattgatgatgaagatgag
gatgcagaggatggggaaccagaagagatgcagttggagcagaagtctgtccctactgcc
gtcttcggaggactaaaggatgactaa
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