Carassius gibelio (silver crucian carp): 127953012
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Entry
127953012 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127953012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127953012
03009 Ribosome biogenesis [BR:
cgib03009
]
127953012
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127953012
Spliceosome [BR:
cgib03041
]
Complex A
U1 snRNP components
U1 related factors
127953012
Complex B
127953012
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
Pre-60S particles
Helicases
127953012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
127953012
NCBI-ProteinID:
XP_052407864
LinkDB
All DBs
Position
B3:26210068..26214838
Genome browser
AA seq
613 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRGGPPQGKKFGNPGERLRKKHWNLDELPKFEKNFY
QEHPDVARRTAQEVEHYRRSKEITVKARDGPKPIMKFHEANFPNYVMDVISKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPGIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSGGRRDFNSYGQDNRNSDSYGQKKVFGNKTQNGSSGYNSSG
SSSFSSGGYSNNGQGNFGNQSGGYGNQGYQNQQFTPNQGALQNGMNHPPPFPFNPQQMPQ
SMQFPMAPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatactcagacagagaccgcggtcgtgacagaggatacagcagtggcccccca
cgctttggaggcagcaggggtggacctcctcagggcaagaagtttgggaatcctggtgaa
cgtctgcggaaaaaacactggaacctggatgagctccctaagtttgagaagaacttctac
caggagcatcctgacgtcgctcggaggacagctcaagaggttgaacactacaggagaagc
aaggagatcacagtgaaggctcgagacggtcccaaacccattatgaagttccatgaagca
aactttccaaactacgtgatggatgtgatcagtaaacagaactggactgatccgactccc
atccaagctcagggctggccagttgcactgagtggcaaagatatggttggcattgcccag
accggctctggaaaaaccctctcgtatctgcttcctggtattgttcacataaaccaccaa
ccattcctggagcgtggagatggacccatttgcttggtgttggctcccacccgtgagttg
gcgcagcaggtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtccacc
tgcatctacggaggcgctcccaaaggaccacagatccgggacctggaaaggggtgttgag
atttgtatagccacacccggaagacttatcgatttccttgaagttggaaagacaaatctg
cgcagatgcacgtatcttgtgcttgatgaagctgaccggatgcttgacatgggatttgaa
cctcagattcgaaaaatcgtggaccaaattagaccagaccgacagactctcatgtggagc
gctacatggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgttggtgctctgcagctcagtgccaaccacaacatcctacagattgtcgacgtt
tgcaacgatggcgaaaaggaagacaaactgatgcgtctgctggaggaaatcatgagcgag
aaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcaccagg
aggatgcgtagggatgggtggccagcaatgggcatccatggagacaagagccagcaggaa
agagactgggtgctcaatgagttcaaatatggcaaagcgcccatcctcattgccacagat
gttgcctccagaggactagatgtggaagacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaaccggc
acggcctataccttctttacgcccaacaacatgaaacaggctcacgacctcgtctcagtc
ctccgcgaggccaaccaagccataaaccccaagctcatccaaatggctgaagacagagga
ggtcgttcaaggggtggtcgaggtggagggtatagggatgaccgtcgggatcgccactct
ggcggcaggcgggacttcaacagctacggccaggataaccgcaacagtgactcttatggg
cagaagaaggtgtttggaaacaaaactcaaaatggatctagtggttacaatagcagcggc
agtagcagctttagcagcgggggttacagcaataacggacagggtaacttcggcaatcag
tctggtgggtacggaaaccaaggctatcagaaccagcagttcactcccaaccaaggggcc
ctccagaacggcatgaaccatcctcccccgttccccttcaacccacaacagatgccacag
tccatgcaattccccatggccccacctgcgttccctcagtaa
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