Carassius gibelio (silver crucian carp): 127953198
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Entry
127953198 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04120
Ubiquitin mediated proteolysis
cgib04137
Mitophagy - animal
cgib04144
Endocytosis
cgib04340
Hedgehog signaling pathway
cgib04350
TGF-beta signaling pathway
cgib04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127953198
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
127953198
04350 TGF-beta signaling pathway
127953198
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127953198
04137 Mitophagy - animal
127953198
09144 Cellular community - eukaryotes
04520 Adherens junction
127953198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgib04131
]
127953198
04121 Ubiquitin system [BR:
cgib04121
]
127953198
03029 Mitochondrial biogenesis [BR:
cgib03029
]
127953198
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
127953198
Membrane trafficking [BR:
cgib04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
127953198
Autophagy
Mitophagy
Other mitophagy associated proteins
127953198
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
HECT type E3
127953198
Mitochondrial biogenesis [BR:
cgib03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
127953198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
127953198
NCBI-ProteinID:
XP_052408126
LinkDB
All DBs
Position
B3:14571459..14609353
Genome browser
AA seq
738 aa
AA seq
DB search
MSNPGTRRNGSSIKVRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLVENEGPVFEDSGPGRPLSCFMEEPM
PYTDPTGAAGGGNCRALESPNQEQRLQAQRIRNQDSRGHAHTPQNRPHGHQSPDLPEGYE
QRTTVQGQVYFLHTQTGVSTWHDPRIPRFANISLRDLNSVSCEELGPLPPGWEIRSTVSG
RIYFVDHNNRTTQFTDPRLHHIMSQHSQVKESSQALPVQMEVGMEEGDGELPVRYERDLV
QKLKVLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLD
YGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLA
VFHGHYINGGFTLPFYKQLLAKPIQLCDLETVDPELHKSLVWILENDIASVLDHTFCVEH
NAFGKFLQHELKPNGKNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELVPQHL
LKPFDNKELELIIGGLGKIDLNDWKANTRLKHCVADSNIVKWFWQAVESFDEERRGRLLQ
FVTGSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTENLPKAHTCFNRIDIPPYESYEK
LYEKLLTAVEETCGFAVE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcgaaggaacgggtcaagcatcaaagtccgactgacagtatta
tgtgccaagaatctggcaaagaaagacttctttcggttgcctgatcctttcgccaaagtg
gtggtggatggctcgggtcaatgccactctacagacacggtcaaaagcacattggacccc
aagtggaatcagcattacgacctttatattgggaagaccgattccatcaccattagcgta
tggaaccacaagaagatccataagaagcagggtgcaggtttcttaggctgtgtgcggctc
ctgtccaacgccatcagcagactaaaagacacaggctaccagcgtttagacttatgcaag
ctgaacccatctgacagtgatgctgttcgtggacaaatcgttgtgagtctgcagaccaga
gacagaattggcagtggagggcctgtggtcgactgtagaggactggtagagaatgaaggg
cctgtctttgaagactcggggcccgggcggcctctcagctgcttcatggaggagcccatg
ccatacaccgatcctacaggagccgctggcgggggcaactgccgtgcacttgagtcgccc
aatcaggagcaacggctccaagcacaacgcatcagaaaccaagattctagagggcatgca
cacaccccccaaaacagaccacatggacaccaatcccctgacctccctgagggctatgag
caaaggaccaccgtgcagggccaagtctattttctgcacacacagactggcgtgagcacc
tggcatgatcccagaataccccgtttcgccaacatctctttaagggatttgaacagcgtg
agttgtgaggagctgggccctctgccgcccggctgggagatcaggagcactgtgtcagga
cgaatttattttgttgaccacaataatagaaccacgcaattcaccgaccccaggttacac
cacatcatgagccaacactctcaggtgaaggagtcgagtcaggctctgcctgttcagatg
gaagttggcatggaggaaggtgatggcgagttaccagtgcgctatgagagagatctggtc
cagaaactcaaagttctccgccatgagctctccctgcagcagcctcaagccggccactgc
cgcatagaagtgtcccgtgaggagatctttgaggagtcttatagacagatcatgaagatg
agacccaaagacctgaagaagcggctgatggtgaagttcagaggagaggaggggctggat
tacggtggagttgctagggaatggttgtatctcctctgccatgagatgctgaatccatac
tacggcctgtttcagtactcgactgataacatctacacactacaaatcaacccggactca
tccatcaaccctgaccacttgtcttacttccactttgttgggcggattatgggtctggct
gttttccacgggcactacatcaatggaggcttcaccttacccttctacaagcagctcctg
gcgaagcccatccagctttgtgaccttgagacggtggacccagaactgcacaagagcctc
gtctggatactagagaatgacatcgcatctgttttggaccacaccttctgtgtagaacac
aatgcttttggcaaattcctccaacatgagctgaaaccaaacggcaagaacatcccggtc
acagaggagaacaagaaagaatatgtgaggctgtatgtcaactggagattcatgcgaggc
attgaggcccaattcctcgccctgcagaagggcttcaacgaactcgtaccacagcatctg
ctcaagccttttgacaacaaggaacttgagctgatcatcggaggtttgggcaagatcgat
ctgaacgactggaaggcgaacacacggctgaagcactgtgtggctgacagtaacatagtg
aagtggttctggcaggcggtcgaatcgtttgacgaggagaggagaggcagattgctacag
ttcgtcacaggctcaacacgcgtccctctacaaggcttcaaagcactgcaaggttctaca
ggttctgcaggaccaagactcttcactattcatttaattgatgccaacacagaaaacctg
cccaaagcccacacatgcttcaaccggatcgacatcccgccttacgagtcatacgagaag
ctctatgagaagctcctgacggccgtggaggagacgtgtggcttcgcagtggagtga
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