Carassius gibelio (silver crucian carp): 127955861
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Entry
127955861 CDS
T08819
Name
(RefSeq) RNA-binding protein with serine-rich domain 1 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127955861
03015 mRNA surveillance pathway
127955861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127955861
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127955861
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_ACIN1
RRM_occluded
PI3K_1B_p101
RRM_7
Nup35_RRM_2
RRM_5
KdpD
Motif
Other DBs
NCBI-GeneID:
127955861
NCBI-ProteinID:
XP_052409453
LinkDB
All DBs
Position
A3:28255697..28261116
Genome browser
AA seq
339 aa
AA seq
DB search
MIIALTHAPPPCACRRINIVTAACSRKRQQDATLDTLGVECVALCSFIMAPSPTKRRERS
EDKPRERGKEKTAGKEGAEKERGRDKIRKRRSKSTGSSSSRSSSSSSSSSGSSSGSSSGS
SSSSGSSHSGSSSSSRSSSSSGSSGSPSPSRRRHDNRRRSRSKSKSQKRTDDKERKRRSP
SPKPTKLHLGRLTRNITKEHIQEIFSTYGKIKMIDMPPDRLHPNLSKGYAYVEYESPEDA
QKALKHMDGGQIDGQEITATAVLAQRIRPVPRRPSPPRRMPPPPPMWRRTPPRMRRRADS
RPFPRSRSPRRRSPVRRRSRSRSPGRRRHRSRSSSNSSR
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgcattaacacacgccccgcctccgtgcgcctgtcgcaggatcaacatcgtc
acggctgcgtgctcacgcaagcgtcaacaagacgcgaccttagatacgctcggcgttgag
tgtgtcgcgctctgctcattcatcatggctccatcaccgaccaagcgcagagagcgttca
gaggacaaacccagggaacgagggaaggagaaaactgctgggaaagagggagcggagaag
gagcgcggccgagacaagatccgcaagcgccgcagcaaatccaccggcagcagcagcagc
agatccagctccagctccagcagcagctctggatccagctcgggctcgtccagcgggtcc
agctcctcttctggttccagccactccgggtcctctagttcctcccgttcgtccagttcc
tccgggtcctccgggtctcccagtccgagccgccggcgccacgataaccggcgccgctcg
cgatcaaagtccaaatcacaaaaacggactgatgataaagagaggaagaggaggagcccg
agccccaaacccaccaaacttcatctgggaagactcaccaggaacataaccaaggaacat
attcaagagatcttttcgacttatggcaagatcaagatgattgacatgcctccggaccgt
ttacacccgaatctgtcgaagggttacgcttatgtggaatatgagtctccagaggacgcg
cagaaagccctgaaacacatggatggaggtcaaatcgacggtcaggaaatcacagccaca
gctgtcctggcccagaggatacgaccagtcccgagaagaccgtcccctccgcgccgaatg
cctccgccgccgcccatgtggcgccgcacgccgcctcgcatgaggagaagagctgacagt
cgtccttttcccaggtctcggtctcctcgacgccgctcacccgtgagaagacgttcccga
tccaggtctccgggtcgtaggagacatcgttcccgctccagttccaactcgtcccgttag
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