Carassius gibelio (silver crucian carp): 127956196
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Entry
127956196 CDS
T08819
Name
(RefSeq) laminin subunit beta-1-like isoform X1
KO
K05636
laminin, beta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127956196
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127956196
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
127956196
NCBI-ProteinID:
XP_052409935
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All DBs
Position
B4:complement(12084835..12106954)
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AA seq
1799 aa
AA seq
DB search
MWILQITALTISIALHTLAQLPDLNDKCAEGSCYPATGDLLIGRAHRLTASSTCGLDGPE
RFCIVSHLQDEADCFECNSRRMYNEFTNPNSHTIENVVTTFAPNRLKTWWQSENGVENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMLIERSADYGRSWQVYRYYAFQCAESYPHVPQGPI
RKVDDVICVSRYSGVEPSTEGEVIFRALDPAFNIPDPYSPRIQNLLKITNLRIRMEKLHT
LGDDLFDDREGVKDKYYYALYDMVVRGNCFCYGHSSKCAPVGVEAGVEGMVSKQNNNYHN
PDPLAHYSPVSLCVCVQVHGHCMCNHHTTGLNCEECEDFYHDLPWRPAVGRETNACKRCE
CNHHSHSCHFDMAVYLSSGNRSGGVCDDCQHNTEGQWCENCKPFYYRHPGRNIRDSRICE
PCDCDPLGSLNGGLCDSATDVQRDMIAGQCRCKANVEGQRCDHCKKGHYGLSEDPLGCRP
CSCNPLGTLPAGSSCDIQTGSCYCKRLVTGRNCDQCLPQHWGLSNDMDGCRPCDCDVGGA
LNNNCSRETGQCACKKHMFGRRCDQVHSGYYFAALDHYIYEAEDASFGPEVKVLEKPLPL
DRKPTWTGKGFADVPEGETLRFSIYNLPRSMEYNLMIRYEPLLPDEWEQVVVQIERPRGT
YPSAHCTSTYNDKQTVSLHPGSRHTVLPGPVCLEKGQNYTVKISFPQYSSYSHHSSPHTL
VDSIVLLPEVQNLALFSGGPQQREDYEMFQKYRCMERSQGVIKIPLTDICRDYIFSVSAL
LHNGALECKCDPQGSLSTVCDNVSGQCQCRPNILGRNCDTCAPTTYLFGPSGCRSCDCNP
LGSQNLFCHPTTGQCLCVPGAYGRQCDNCKPNHWGFPQCQPCFCNRNSEQCHPVTGECLN
CRGHTTGHNCERCESGYHRNTLLGSSEPCRPCMCPNGPGSGMQFAESCYQNPNSLQMVCV
CSSGYKGPKCEECASGYYGNPQVPGGRCHPCQCNRNINMQDPESCDARTGACLKCLFHTD
GSACQYCSRGYYGDARTQNCRKCMCHLVGSSRQGCVDGLCECDRVTGQCPCLPGVVGQHC
DRCAPNTWNINSGKGCQPCQCHPEHSYTSSCDLLTGQCSCKPGFGGRTCEECRELFWGNP
ELQCHACDCDPRGIATQQCNKMTGECVCVEGVAGRRCDSCGRGYIGTFPDCEACHLCFRD
WDVNVGELTNHTQRLVDTVEEIKDTGVATPYKDIISSLDDETRQLRQILEDDKVQQTLTH
VQRKLQQVNETASLLRKSMNRSVTDLDKVSADHQQAVENLKGLTEEAQNLQEISSDKQQQ
VLNIKHSDPRGAVDSIREYYKESGEAQFRVNRAVSDPKSTVKESAQIRKATEAKLDSTVN
EFNLKHQLHLQRLDKIESDLDAADLSRLSHQVCGGGSGLDGCGNCGGLGCVSADGTSQCG
GEGCETIVTRSQKALNEAKNSDQEVLHALREVDKLNKMVSDARGRADEAKLNAQDVLLRA
NQSKARVEQTNEELRDLIQQIRDFLTNETDLKRIEEVADEVMKLSLPVLPAALKNVTTEI
HQHLSRLTQVDDILSQTAESAHTAQRLLQAAQAAKERATALKRATDEAKETLEDTERAQT
AAGEKLQEVKSDMNQTKQQIADVQSKTEATEFKLSSSTRRFLDLEREVDELQHKTQETSR
SADETVRLKEYITSEIDLTEKDIDLLVQPKYQLASGVIDQKAAGVVDARQKAEELRQEAE
ALLKDTTTKLQRLRELERLFEVNQDILVEKAQEMDALENEARDVLQELSQKITIYSTCA
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgtggattctccagattacagctcttacaatatctattgctttacacaccctggcacaa
ttacctgatcttaatgacaagtgtgcggaggggagctgttaccctgctactggtgatttg
ctgataggaagagcacatcggcttacagcctcctccacctgtggactggatggaccagag
agattctgcattgtaagccatttgcaggatgaggcagactgttttgaatgcaattctcgg
cggatgtacaatgagttcaccaaccccaacagccacaccattgagaatgtggtgacaacc
ttcgctcccaaccgcctcaaaacctggtggcagtccgagaacggagttgaaaatgtgacc
attcagctggatttggaagctgaattccacttcacacacctcatcatgacctttaagacc
tttcggccggcagccatgctgattgagcgttctgcagattatgggcgaagctggcaggtg
taccgttactatgctttccaatgtgctgaatcctatccgcacgtccctcaggggccaatc
agaaaagtggatgatgttatttgtgtcagccgctattcaggcgttgagccatcaacagaa
ggagaggtcatatttagggcacttgatcctgcgtttaatattccggacccttacagccca
cgcattcagaacttactgaagattacaaacttgcgtatacggatggaaaagttgcacact
ttaggtgatgatctgtttgatgaccgagagggagtgaaagataaatactattacgctctg
tacgatatggtcgtccgtggaaactgtttctgctatggccactcctccaagtgtgcacca
gtcggcgttgaggcaggggttgagggcatggtgagtaaacaaaacaacaactatcacaat
ccagatccacttgcacattactcacctgtgtctctgtgtgtgtgcgtgcaggttcatggt
cattgcatgtgtaatcaccacactactggactgaactgtgaagagtgtgaggacttttac
catgatctgccctggagaccagcagtgggtcgggagacaaatgcatgcaagagatgtgag
tgtaaccatcactcgcattcctgtcatttcgacatggcggtgtatctgtcatcggggaat
aggagtggaggagtgtgtgatgactgtcagcacaacacagagggccagtggtgtgagaac
tgcaaacccttttactacaggcaccctggcagaaacatcagagactccaggatctgtgag
ccctgtgattgtgacccacttggttctctgaacggaggcttatgtgacagcgctacagat
gttcaaagagatatgatagccggacagtgtcgctgcaaagctaacgtggagggacaacgg
tgtgaccactgtaaaaagggacattatggcctcagtgaagacccattaggctgtcggcca
tgcagctgtaatcctctaggcacactcccagcaggaagttcctgtgacatacagacagga
agctgttactgcaaacgtcttgtgactggacgaaattgtgaccagtgtctgccgcagcac
tggggtctcagtaatgatatggatggctgcagaccatgtgactgtgacgtaggcggggct
ttgaataataattgttctcgggagacaggacagtgtgcctgtaagaagcatatgtttggt
agacgatgtgaccaagtgcattctgggtactactttgcggcactggaccactatatttac
gaagctgaggatgcttccttcggacccgaagtaaaagtgcttgagaaaccgttacctttg
gatcgtaaaccaacctggacgggtaaaggatttgcagatgtaccagagggtgaaacactg
aggttcagcatttacaatttaccacgatctatggagtacaacttaatgatccgctatgaa
ccactgttgccagatgaatgggagcaggttgtagtacagatagagcggcccagaggcact
tacccatcagcacactgcacttctacatacaatgataagcagactgtctcactgcaccct
ggatccagacatacggttctgcctggtccagtgtgtttggagaagggtcaaaattacaca
gtgaaaattagcttcccgcagtactcctcatacagccatcactcttctcctcatacactt
gttgattcaatagtgcttttgccagaggtgcaaaacctggctctgttttctggcggacca
cagcagcgggaggactatgagatgttccagaaatacagatgtatggagcgcagccagggt
gttattaaaatccccctaacggatatttgcagagattacatcttcagtgtgtcagcacta
cttcacaatggagctctggagtgcaagtgtgacccccaaggttctctgagcacagtgtgt
gacaatgtcagtgggcagtgtcagtgccgacccaacattttaggaaggaactgcgacacc
tgtgccccgaccacctacctgtttggaccctcaggatgtagatcatgtgactgtaaccca
ctgggctctcagaacctcttctgccaccccaccacgggccagtgtttatgtgtgccaggg
gcatatgggcggcaatgtgacaactgtaagcccaaccactggggcttccctcaatgccag
ccctgcttctgtaacaggaacagtgaacagtgccacccagttacgggcgagtgtctgaac
tgcaggggtcacaccacaggccacaactgtgagaggtgtgaaagtggttatcaccgtaac
acactgctgggctccagcgagccgtgccgcccttgtatgtgtcctaacggacctggaagt
ggaatgcagttcgctgaaagctgttaccaaaatcccaactctctccaaatggtgtgtgtc
tgcagctctggctacaaaggacccaagtgtgaggaatgtgcctctggatactatggtaac
cctcaggtcccaggaggacggtgccatccgtgtcagtgtaacagaaatattaacatgcag
gaccctgaatcatgtgacgcccgcactggtgcctgtctcaaatgtctgtttcacaccgat
ggcagtgcatgccagtactgcagtcgtggttattatggagatgcccgtactcagaactgc
aggaaatgcatgtgccatctcgtgggaagttctaggcaaggatgtgttgacggcttgtgt
gagtgtgacagggttactggccagtgcccatgtctgcccggcgtggtgggacagcactgt
gaccgctgtgccccgaacacatggaacatcaacagtggcaaaggatgccagccttgccag
tgccaccctgaacattcgtacacgtcctcctgtgatctgctgaccggtcagtgttcctgt
aagcctggttttggaggcaggacgtgtgaggagtgcagggaactgttctgggggaacccg
gagctccagtgccatgcatgcgactgtgatccacgaggcattgctactcagcagtgtaat
aagatgaccggagagtgtgtgtgtgtagagggtgtagctgggcggaggtgtgactcatgt
ggacgtggctacattgggacgtttcctgactgcgaggcctgtcatctgtgtttccgcgat
tgggatgttaatgtgggagagctgaccaatcacacgcagagactggtggatacagtggag
gaaattaaagacactggcgtggctacaccctacaaagacatcatatcgagtctggatgat
gaaaccagacagctcagacagattctggaagatgacaaggttcagcaaacgctcacacac
gtgcagaggaagctgcagcaagtcaatgagacagcatctctcctgagaaaatcaatgaac
cgatctgtaacagatctggacaaggtctctgctgaccatcagcaggctgtggagaaccta
aaaggcctgactgaggaggcccaaaacctacaagagatctcctctgacaaacagcagcag
gttctgaatatcaaacattcagacccgagaggtgcggtggacagcatcagagagtattac
aaggaatccggagaggcgcagtttcgtgtcaatcgagctgtctctgatccaaaaagtaca
gttaaagagtctgcccagatacggaaagctacagaggccaaattagacagcacagtaaac
gaatttaacctgaaacatcagctgcatttacagaggctggacaaaattgaatctgacctg
gacgccgcagacctttcacgacttagccatcaggtgtgtggaggggggtcaggtctagat
ggttgcggtaactgtggcggtttgggatgtgtgagcgcggatggcacgtcccagtgtggt
ggggaaggatgtgagaccattgtgacacgatcccaaaaggccctgaacgaagccaaaaac
tcagaccaggaggtcctgcatgctttaagagaagtagacaagctaaacaagatggtgtca
gatgctcgaggacgtgccgatgaggccaagctcaacgctcaggatgtattactgagagcc
aatcagagcaaagcgcgagtggaacagaccaatgaggagctcagagacctcattcagcaa
atacgagacttcctcacaaacgaaactgatctgaagcgtatagaagaagtagcagatgag
gtgatgaaactgagtttgccagtgttgcctgctgcactaaaaaacgtgaccacagagatc
caccaacatttgtccagactgacccaggtggatgatatcctgtcccagacggcagagagc
gcacacactgcacagagactcctgcaagcagcacaggctgccaaggagagagctacagct
ctgaaacgggccactgatgaggcgaaggaaactctggaggacactgaacgtgctcagact
gcagccggcgaaaaactgcaagaggtgaagagcgacatgaaccaaacaaaacaacaaatc
gcagatgtgcaatcaaaaactgaagcgactgagttcaaactgagtagcagcacaagaagg
tttctggatctcgagagagaggtcgacgaactccaacacaaaactcaagaaacatcccgc
agcgcagatgagactgtaaggctaaaggagtacatcacatcagaaatcgacctcactgaa
aaggacattgacttactcgtgcaaccgaagtaccaactggccagtggtgtgatagatcag
aaggcagcaggtgtggtggatgcacgtcagaaggccgaggaactacgtcaggaggcagaa
gctctattaaaagataccacgaccaaactgcagagactgagagaactggagagattattt
gaggtcaatcaggacattctggtggagaaagctcaggagatggatgcactggagaacgag
gccagggatgtactgcaagaactcagtcagaaaatcaccatctacagcacctgcgcttaa
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