Carassius gibelio (silver crucian carp): 127956213
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Entry
127956213 CDS
T08819
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
cgib03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127956213
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127956213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127956213
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127956213
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
127956213
NCBI-ProteinID:
XP_052409963
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All DBs
Position
B4:26568309..26578810
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AA seq
545 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDVSSPSANNGDAPEDRDYLDNLPAPGG
SEGSKGAPPNVVFTYTGKRIALYIGNLTWWTTDEDLTDAIRSVGINDVLEIKFFENRANG
QSKGFALVCVGSDSSSRKLIDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSIQSGQMS
GEGKAGPPGSGSRSGFPPGKNRGRFPTPPGPGGDRFPGSGGPGGPPPHFQGMQGPPRPPS
GPPGPPGPPGPPLPGQGLLPPLGGPPNRGDRPPPPVMFPGQFGQPPMGPMPPGPPPPGYG
PPPGPLPPQQGLPPPGPFPLRPPGPLGPPLGLAPPPHMQGPPPGGPPPAPHVNPAFFPPP
GNNNMPSSDSRGPPPGDMYGRPPPYDRDFGPGGRDMDSSRAPLSEAEFEEIMNRNRAISS
SAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYG
SALKRERSRERDHSRSREKHRRKSRSRDRHEDYYRERSRERDRHRERDRERDRERDRERE
REYRR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtcgaccacatcgatatttacgccgatgtagaagaggaatttaatcag
gagtctgattatcctgttcatgagcagattgacctttatgatgtcagctcaccatctgcc
aacaacggggacgcacctgaggaccgagattacctggacaacctgcctgcgccgggtgga
tccgaggggagcaaaggagctccgccgaatgtcgtcttcacctacaccggcaaacgaatc
gctctgtacatcggcaacctcacatggtggaccacggatgaagatttgactgatgctatt
cgctcagtaggcatcaatgatgtgctggagatcaagttttttgagaatcgagcaaatgga
cagtccaaagggtttgctctggtctgcgtgggttcagactcatcgtccaggaagctgata
gacctgctgtccaaacgagagctgcacggacaaaacccaatcgtcactccttgcaacaaa
cagtcgctcagccagtttgagatgcagtcgcgaaaaagcatacagtccgggcagatgtcc
ggagaggggaaggccgggcctccaggctcaggatctcgcagtggatttcctcctggcaag
aatcgcgggcgctttcccacccctcctggcccgggaggagaccgcttccctggatcaggt
ggacctggtggacctccaccacacttccaaggtatgcaaggcccgccgcgtcccccctca
ggcccacctgggcctccaggaccccccggcccccctctacccggtcaaggtctgctgcca
cccctcggaggtcctccgaatagaggagaccgtcctcctccacccgtcatgtttcctggt
cagtttggtcagcctcctatgggtccgatgcctcctgggccgcccccacctggatacggg
cctcctccaggcccccttccacctcagcagggtctgccccctccgggaccctttcctctc
cgtccacctgggcccttaggacccccgcttggcctcgcacctccacctcacatgcaggga
ccccctcctggaggtccaccaccggcccctcacgtcaacccggccttcttcccaccgcct
ggaaacaacaacatgccctcgtccgacagcaggggcccaccgccgggtgacatgtacggc
cgcccgcctccatatgacagagactttggccctggtggcagggacatggattcgtctcgc
gctcctctgagtgaagctgagtttgaggagatcatgaatcgtaacagagcgatatccagc
agtgctatctcgagggcagtgtccgatgcgagtgcagctgattacggcagtgctatagag
actctggtgaccgccatctctctgatcaagcagtcaaaggtttctgctgatgaccgctgc
aaagtcctcatcagctcactgcaggactgcttgcatggaatagagtccaaatcctacggc
tctgcattgaaacgggaacggtccagggagagggaccacagtcgctctcgtgagaagcat
cgccgcaagtctcggagccgagaccgacacgaggactattacagagagcgcagccgcgag
agagaccgtcatcgtgagcgagaccgcgaacgtgaccgcgagagagaccgagaacgtgag
cgggagtatcgccgttag
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