Carassius gibelio (silver crucian carp): 127956344
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Entry
127956344 CDS
T08819
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127956344
09123 Folding, sorting and degradation
03018 RNA degradation
127956344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127956344
03041 Spliceosome [BR:
cgib03041
]
127956344
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127956344
mRNA degradation factors
5'-3' decay
Lsm complex
127956344
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127956344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
127956344
NCBI-ProteinID:
XP_052410143
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All DBs
Position
B4:complement(22531736..22533822)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgctcttgagagctacattaaccggacggttgctattgtgacttcagatggc
agaatgattgtggggacgctaaagggctttgatcagacgatcaatctcatcctggatgaa
agccacgagcgggtgttcagctcttcccagggtgtagagcaggtggttctgggactgtat
attgtcagaggcgataatgtggctgtaatcggtgaaatcgatgaagaaacagattccgca
ctggatcttggaaacataagagcagaaccactcaattctgtggcacactga
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