Carassius gibelio (silver crucian carp): 127956984
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Entry
127956984 CDS
T08819
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03030
DNA replication
cgib03410
Base excision repair
cgib03420
Nucleotide excision repair
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127956984
03410 Base excision repair
127956984
03420 Nucleotide excision repair
127956984
03430 Mismatch repair
127956984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgib03032
]
127956984
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127956984
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
127956984
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
127956984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
AAA_7
RuvB_N
Rad17
AAA_33
AAA_17
AAA_14
AAA_16
nSTAND3
BRCT_2
NTPase_1
AAA_18
AAA_19
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
127956984
NCBI-ProteinID:
XP_052411308
LinkDB
All DBs
Position
A1:3341482..3353280
Genome browser
AA seq
1111 aa
AA seq
DB search
MMDIRRFFASSKPAAPKPSNESTNTDEEQKKKQKSKTKVKGLTSNEKLSGKRKKRVIIDS
DFEEEKEKEKETKTSAKDSDSDDTLMTLKTSKPKENGAAKGKKESDSGKAKQPQVSSRKS
PTKSPNAVSKGAAKSSQPTVSPKVEPPKHTPTSVMSFFGSSSVQRSEKKMVASSSTKRKA
PTQDTEEPLSDEAIAKQLQMDEDMELEKKIHDDEEFARTLAMLDDAPLPKKARVDSPTES
STSTSNTKPKIDPSPKQSPVKTSSKLARMKRQEEEQRKKDRGEKQMKISPKKEPMSPTSS
ERAATPKSAASVSTGATKSPKSVGAPLKTSPAKPENKSPEDLEKKRANSSAYRNFLNREG
PRALGSKEIPQGAENCLEGCVFVLTGVLESLERDDAKSLIERYGGKVTGNVSRKTTYLVL
GRDSGASKSEKAESFGTKIINEDELLELIRTKPGKKSKYEIAAEAENKSFKARTPDSRHK
HASPSKKATPEEPSPKKSSPSKGKSKPGSASKSGTLGVSHSEVKKSLSFDQTTSASPVSH
STPENDGRSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQNWHKHHSGITKAPSKLGK
FGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVIAESL
NNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDR
NHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVX
RLTNKSASKTVCIQNDANNARKDMKLGPFDVCRKVFASGEETAHMTLIDKSDLFFHDYSL
APLFVQENYLHVRPASARGNLKNHLVLLSKTADSICDGDLVDKQIRSRQAWSLLPTQAIY
ASVLPGELMRGYMSQFPTFPSWLGKFSSAGKHSRIIQELASHMSLKTLSSKEAINLDYLP
YLRSAVLEPLQSRGSEGANQSVQIIDDYDLIKEDVDNMMEISTWGGQPDPYSKLDSKVKA
AFTRAYNKESHLTPYSLQVVKKSRKGAVDPELIGELDGESQIQEEEDDDGVTADAMIKQK
KAKPAKDTKQEKPGASGKGKGRGKGKGKAVN
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgatggacatccggaggttttttgcgtctagcaaacctgcggcacccaaaccttcaaat
gaaagcaccaacactgatgaagagcagaagaagaagcagaagtcaaaaactaaggtcaaa
ggtctcacatctaatgaaaaactttctggaaagcgaaagaaaagagtcataattgattca
gactttgaagaagagaaagagaaagagaaggagaccaaaacaagcgctaaagattctgat
tctgatgacacattaatgactctaaaaacgtccaaacctaaagaaaatggagccgctaag
ggcaagaaagaatcagattcgggaaaagcaaaacaaccgcaagtttcttccaggaaatcc
ccaaccaaatccccaaacgcggtctcaaagggagcggcgaagagctctcagcccaccgtc
tccccaaaggtggagccaccaaaacacacgcccacctcagtaatgtccttctttgggagc
tcaagtgttcagaggtcagagaagaagatggtggccagtagcagcactaagaggaaggct
cccacacaggacactgaagagccactcagtgatgaagccattgctaaacaacttcagatg
gacgaagacatggagttggaaaagaagatccatgatgatgaggaatttgcgagaacatta
gccatgctggatgatgctcccttaccgaaaaaggctcgagtggactccccaacagagagc
agcacaagtacctcaaacaccaaacccaaaatagacccgtcccctaaacaaagtcccgtg
aagaccagctccaaactggctcggatgaaaaggcaagaggaagagcaaaggaagaaagac
aggggtgaaaaacaaatgaagatttctcctaaaaaagagcccatgtctccaactagctca
gagcgagcagctacgcccaaatcagcagcaagtgtttccacaggagccacaaaatcacct
aaaagtgtaggagcacccttgaaaacctcaccagcaaaaccagagaataaaagtcccgag
gacttagagaaaaaacgggcaaattcatcagcctaccgtaactttttgaacagagaagga
ccacgagcactagggtctaaagagatcccgcagggagcagagaactgcctggaggggtgt
gtgtttgtgttgaccggtgtgttagagtctctggagagggatgatgccaagtcactaata
gagcgatatggcgggaaagtcacaggaaacgtcagccgtaaaaccacttaccttgttctg
ggacgagacagcggggcatcaaagtctgagaaggcggagagttttgggactaagatcata
aatgaagatgagctgttggagctcataagaaccaaaccaggcaagaagtctaaatacgag
attgcggcagaagcagagaataaatcctttaaagcaaggactccagactctagacacaaa
cacgcttctccatccaagaaggccactccagaagagcccagccccaaaaagagcagccct
tcaaaggggaagtctaagcctggctctgcttctaaatctggaacactaggcgtctctcat
tcagaggtcaaaaagagtttgagcttcgatcaaaccacgagcgcatcccctgtatcccac
tccacccctgagaacgatgggaggagcctgttgtgggtggataagtaccgccctcgtagt
ctgaagaacctgattggccagcagggggatcagagctgtgccaacaagcttctgcgctgg
ttacagaactggcataaacatcacagcggcattacaaaagcaccatccaaattgggtaaa
tttgggagtaaagatgacggttctggatttaaggctgcgttgttgtccgggcctcctggt
gttgggaagaccactactgctgccctcgtctgtgaggagttgggtttcagctacgtggag
atgaacgcgagctgcacacgcagtaagaacagcttaaaggaagtgatcgcagagtcactc
aacaacaccagcattaagaacttctataccggtgcatctcagacggtgagcagtaaacat
gtcctcataatggacgaggtggacgggatggcaggaaatgaagacagaggaggaatacag
gagatgattggtctgataaaacagtcaaagattcccatcatctgcatgtgcaatgaccgc
aatcatcagaagatccgctcgctggccaactactgctacgacctgaggtttcagagaccc
cgcgtcgagcagatcaagggggctatgatgtctatagctttcaaagagggtctgaaaatc
ccacccccggcacttaatgaagtcatcctggcgtccaatcaggatattcgacaggtantg
cggttaacaaacaaatctgcatccaaaacggtctgcatccaaaacgatgctaacaatgct
aggaaggacatgaagctgggtccgtttgacgtgtgtcggaaagtgtttgcttcaggagag
gaaaccgcccacatgactttgattgacaaatcagaccttttcttccatgattactcttta
gcaccactatttgttcaggaaaactacttgcatgtccgaccagcctctgcacggggaaat
ctgaagaatcatttggtgttgttgagtaaaacagcagacagtatttgcgatggagattta
gtggacaaacagatccgctccagacaggcatggtctctgcttcccacacaggcgatctat
gcgagtgttttgcctggggaactgatgcggggttatatgagccagtttccaacctttccc
agctggttgggcaagttctcatccgctggcaaacacagccgcatcatacaggagctcgct
tcacacatgagcctaaagacgttaagcagtaaggaagcaataaatctggattacctgccg
tatttgcgctctgcagtattagagcctcttcagtcgcggggctcggagggagccaatcag
agcgtgcagatcatagatgattatgacctcatcaaagaggacgttgataacatgatggag
atcagcacttggggcggacagccggatccttactctaaactggactccaaggtgaaagct
gcgtttacaagagcctacaataaggaatcccatctcacgccgtactctttacaagtggtt
aagaaaagccgtaaaggtgccgttgaccctgagcttataggagagcttgacggtgaatct
cagatccaggaagaggaagacgacgatggcgttaccgcagatgcaatgataaagcagaaa
aaagccaaaccagcaaaagacacaaagcaagagaaaccaggggcttctgggaaggggaaa
ggcaggggtaaaggaaagggaaaagcagtgaactga
DBGET
integrated database retrieval system
