Carassius gibelio (silver crucian carp): 127957057
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Entry
127957057 CDS
T08819
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03320
PPAR signaling pathway
cgib04148
Efferocytosis
cgib04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127957057
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
127957057
03320 PPAR signaling pathway
127957057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127957057
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgib03310
]
127957057
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
127957057
Nuclear receptors [BR:
cgib03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
127957057
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
127957057
NCBI-ProteinID:
XP_052411370
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All DBs
Position
B5:complement(24018585..24075271)
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AA seq
503 aa
AA seq
DB search
METKPFLSLGLLKNPCSVAPPCLRSRPGDAGSSSNGCSGFTGTYPLQQRRISTDSSGQLS
SSPLSSSSGHRGISNHPLHPPLLGPSAMNSSQGQLHSPISTLSSPINGLPSPFPIINSPM
GHPSTSMTFRPSLSPQLSSPMNAVSSSEDIKPPLGLNGVMKVPAQPTGTSLSLTKHICAI
CGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLA
MGMKREAVQDERQRAKERSEAEFGSCANEDMPVEKILDAELAVEPKTETYVEANLSAPAN
SPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIA
VKDGILLATGLHVHRDSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD
SKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF
KLIGDTPIDTFLMEMLEAPHQMT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttgtctctagggctcctgaaaaacccctgctcagtagcaccg
ccgtgtttgcggagccggccgggcgatgctggcagttcgtccaatggctgctcaggcttc
acgggtacatacccgctacaacagcgcaggatatccacagactcctctggtcagctctcg
tcatctcctctgagctcctcctcgggtcaccgaggcatcagtaaccatcctctccacccg
cccctgctcggcccttctgccatgaactccagccagggtcagctgcactcgcccatcagc
accctcagctcgcccatcaacggcctgccctcgccgttccccatcatcaactcacccatg
ggccacccctccactagcatgaccttcagacccagcctgagcccacagctcagttcaccc
atgaatgcagtcagtagttcggaggacattaaaccccctctgggtctgaacggggtgatg
aaggtcccagcgcagcctacaggcacatccctctccctcactaaacacatctgtgccatt
tgcggagaccgttcatcaggtaaacactacggggtgtacagctgcgagggctgtaagggc
ttcttcaagagaacggtgagaaaggatttgacgtacacttgccgagacaacaaggactgt
ataattgacaaacgccaacgcaaccgctgccagtactgccgttaccagaagtgcttagcc
atgggaatgaagagagaagccgttcaggacgagcgacagcgagcgaaggagcggagcgag
gctgagttcggcagctgtgccaatgaggacatgcccgtggagaagattctggatgccgaa
ctggcagtggaaccaaagacggagacctacgtggaggccaacctgagtgcgcctgccaat
tctcctaacgaccctgtaacaaacatctgccaagcagctgacaagcaactctttacctta
gtggagtgggccaagcggatacctcacttttctgatctcccgctggacgatcaggtcatc
ctcctgagagcagggtggaatgaactcctgatcgcctctttttcacatcggtctatagct
gtgaaggatgggatattattagccaccggccttcacgtccatagagacagtgcacacacg
gccggtgtgggagccatctttgacagagtgctgacggagcttgtgtcaaagatgagagac
atgcaaatggacaagactgaacttggatgcctgcgggccattgttctgttcaatccagat
tcaaaaggactgagtaatccatcagaggtggaggcattaagggaaagagtgtatgcatct
ctagaggcctactgtaaacacaaatatcctgatcagcctggaagattcgccaagctgtta
ctgcgtctgcctgccctgcgctccatcggcctgaagtgtcttgaacatctcttctttttt
aagttgatcggagacacacccatcgacactttcctaatggaaatgctggaagcgccacac
caaatgacataa
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