Carassius gibelio (silver crucian carp): 127957549
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Entry
127957549 CDS
T08819
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127957549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127957549
03036 Chromosome and associated proteins [BR:
cgib03036
]
127957549
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
127957549
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
127957549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
127957549
NCBI-ProteinID:
XP_052412101
LinkDB
All DBs
Position
B5:complement(38794421..38817410)
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AA seq
1741 aa
AA seq
DB search
MSAEVLRPGPVAGGGSKLGELIGKLHEYLAVATENQTEATLPGHWNGTTAKEYLEQQARA
QSSGLSEVGMLSSRSRRKPAVVTKHSGMNESDASSESGAEDVMSVHSSDPDTNALPKGTV
FLLPEPVGNEARDDFRGPEFRSRRIHKQHRDGGDRRRGGYELERVNCTACGQQVNHFQRD
SVYRHPMLNVLICKNCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAFCKKCV
LRNLGRKELSTILEEERKWYCYVCSPEPLVELVLSCDAVLENLEQAQKRASRTEPNSVRG
RANKGGRGLMGPVPSAGLYQRMQRFVDVTTSLSHSFKAVVQSEREEEGNQEERIGQLRMF
RTVLDDLQAANSALQEALDHELTGSKRACGDTHKPKARSRKKKALSSQSLGLTKKLVVQL
TPVPVSPQPISRTSLPTHPSPERQTINREVTDGALEQRETLVEMEKGMEMEEMIERGEDV
ENDCVNNDEEEEEEDEEVEEDEDQTDPKNVSLSEENKRSPRVKTTPRRRRTNQSSTAEHA
GSAEDDSDSDEVPEVLLQTAAAMANSEEEGLVGSSWDGDEVNQQVRKQRLFGLVKTTPPD
RGSRKRNLKERSSSSSSSSSASSRRGSQNQGSSVRMTRGRARKVARVTEQSGSSSSEVGG
QELESGPSSDSDDQRIKPLTDDVTLLGSGNFQQSSGDEMDIQPGPSLSVEDDDLENRIAK
KILLAQIRANLSSASELDASSDEQSESTKEEQKKNKNNDRTSETTEEEDNDDSDCSESQS
GSRHRHRLLRHGLTLSEAEAKSQKQAVKKSKKREDLECVIVSSDESSETSVSSGVYDELS
HSECEEIGSQSPTHDEKCQSPDRSSTADNNVSPTTEEHLRGTPRGRRQIRPLLEVGQLAK
ETQSALKEEEERRRRLAEREKLRLENERREREDADSEVILVSEKPAQSFTPLVLEQDDVT
HKPVLQVHLHFLSKLKPHQQEGVRFMWDCCCESIQSVKTTPGSGCILAHCMGLGKTFQVI
VFLHTVLLCKELPLKRALVVCPLNTVLNWRSEFDQWQRGLRPNILWVAELATVKSVSVRV
ELLNDWFANGGVMIMGYEVFRILTHTDSAKYSKHKEAFRSMLLDPGPDLVVCDEGHVLRN
AESSISKAMRALRTRRRIILTGTPLQNNLTEYHCMVNFIKENLLGSLKEFRNRFINPIQN
GQCADSTPADVRLMKNRSHVLHQMMSGFIQRRDYSVLMSCLPPKHEYVLSVRMTHLQCRL
YTHYLQNYTGKGVGVNSLFQDLHVLSLIWTHPWCLKLAQLSRNKGKEEVPAPVFPGLGAG
LVGSSVNPNDSERRDATSTGLVGDGERNKDPVSLGSRSNQNPQHSDVTNTATTEISGGEA
GFVVGNGPPADWYMRFITAADAKVLEHSGKLQLLLEILHWAEKLQDKVLVFSQSLITLDL
IESFLLYADESRGKTCCPYKGEKAWVKNKDYYRLDGNTSACARKRWAQEFNNTKNIRGRL
FLISTRAGSLGINLVAANRVVVFDACWNPSYDIQSIFRVYRFGQKKTVYVYRFLAQGTME
QNIYERQVAKQSLSSRVLDQQQIQRHFTHSQLNELYCFQPNLQPSKHTERPVDDLLAQML
QSCGQLIVSYHEHNSLLDHREEEELSEEERRAAWDEYRAEKKASTQNSNEVTHRNANQAL
QQAMASLNFAYTTNSVPSTASLHVKPGNAEGSAAWVTYNNSNITFRLEHPNVVFSAPRTN
T
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaagttctcagacctgggcctgtggctggtggaggcagtaaactaggtgag
ctgatcgggaagctccatgagtatttggcagtagccacagaaaaccagactgaagctact
ttacctggacactggaatggaaccacggccaaagaatacttggagcagcaggctcgcgcc
cagtccagtggcctctcagaagtgggaatgctgtcatctcgttcgagaaggaaaccggct
gttgtcaccaaacacagcgggatgaacgagtcggacgcttcatctgagagtggagcagaa
gatgtaatgtctgtgcactccagcgacccagacaccaacgcactgccaaaaggaacggtg
tttttgttgccggagccggtgggtaatgaagctcgtgatgatttccgtggtccagaattc
cgcagtagacgcattcacaagcagcacagagatggtggtgacagacgcagaggaggatat
gagttggagagggtgaactgcacagcgtgtggtcagcaggtgaatcatttccaacgtgac
tcagtctacaggcatccaatgctcaatgtcctcatctgcaagaattgttttaagtattat
atgagtgatgacatcagcaaagattcagagggaatggacgagcaatgcaggtggtgtgca
gaaggaggcagtctaattggctgtgattactgcagtaatgccttctgtaagaaatgtgtt
ctacgtaacctggggaggaaggagctgtccacaatcctggaggaggagaggaagtggtac
tgttatgtgtgcagtcccgagccattggtggagctggttttgtcctgtgatgcggttcta
gagaacctcgagcaggctcagaaacgagcctcccgtactgagccaaactcggtccggggc
agggctaataagggtggtcgtgggctgatgggcccagtgccctctgcaggcctttaccag
cgaatgcagcggtttgtagatgttaccacatctctgagccattccttcaaggcagttgtt
caaagtgaaagagaggaagaaggaaaccaagaagaaagaattgggcagctaaggatgttc
cgcactgtgctggatgatctgcaagccgccaacagtgcattacaggaagccctagaccat
gagctgactgggtccaaacgtgcctgtggagacacacataagccaaaagcgaggtccaga
aaaaaaaaggcattgtcatcacagagcctaggactcactaaaaagctggtggttcaactc
actcctgtaccggtcagcccacaacccatcagcagaacgagtcttcccactcatccatct
cctgagagacaaacgatcaaccgtgaggtgacagatggagcactggaacaaagagagaca
ttggtagagatggagaaggggatggaaatggaggaaatgatagagagaggagaagatgtg
gaaaatgattgtgttaataatgacgaggaggaggaggaggaagatgaggaggtggaggag
gatgaggaccaaactgaccccaaaaatgtgtctttatcagaggagaataaacgttctcca
cgtgtgaaaaccacaccacggcggcggcggacgaaccagagctccacggctgagcacgcc
ggttcagctgaggatgactctgactctgacgaggtgcccgaagtgctgctccagaccgcc
gctgccatggcaaacagtgaggaagagggtttggttggtagcagttgggacggggacgag
gtaaaccagcaagtcagaaagcagcgtctctttggactggtaaaaacgacacctccggac
agaggctctcgaaagcggaatctcaaagagagatcctcatcgtcctcatcgtcttcctct
gcgtcttcaaggaggggctcccagaaccaggggtcatctgtcagaatgaccaggggaagg
gcccgcaaagttgccagggtgacggaacagagcgggagttcgtcaagtgaggtgggagga
caggaactggagagtgggccgagcagcgactctgatgatcagaggatcaagccgctgaca
gatgacgtcacgttgctgggctctggaaatttccagcagtcttccggtgatgagatggac
atccagccaggtccgtctttatctgtggaggacgatgatttagaaaatagaattgcaaag
aagattctgctggctcagatcagagctaacctctcctccgcatctgagctggacgccagc
tccgatgagcaatcagagagcacaaaagaagagcagaagaagaacaagaacaatgacaga
acctcagagacgaccgaagaggaagataacgatgactccgattgcagcgagtctcagtca
gggtcacggcaccgccaccgattgctgcgacatggtcttaccttatcagaggctgaagca
aaaagtcaaaagcaagcggtaaagaaatctaagaaaagagaagatttagaatgtgttatt
gtgagtagtgatgaatcgagcgaaacgagtgtatcgagcggcgtttatgatgaactcagc
cattcagagtgtgaggaaatcgggtcccagtcgcccactcatgatgagaagtgtcagagt
cctgacaggagcagcactgctgataataatgtctctccaaccactgaagagcatttgagg
ggcacaccgcgagggcggaggcagatcagaccgcttctggaggtgggtcagctggccaag
gagacacagagcgctctgaaagaagaggaggagcgcaggaggagattagcagagagagag
aaactgagactagaaaatgagaggagagaacgagaagacgcagactccgaggtcatatta
gtgtctgagaaaccagctcaaagcttcacaccattggttctcgagcaagatgatgtaaca
cataaacctgtgctgcaagtgcacttgcactttctgagcaaactcaaaccacaccaacaa
gagggtgtgcgcttcatgtgggactgctgctgtgagtccattcagagtgtgaagactact
ccaggctctggctgtattctggcccactgcatgggtctgggaaagacctttcaggtcatt
gtgttccttcacacagtgctgctatgtaaagagctgccactgaaaagggctctggtggtg
tgtcctctcaacacagtgctgaactggaggagtgagtttgaccagtggcagaggggcttg
aggcccaacatactgtgggtggcagagctggccacggtgaagtctgtgagtgttcgtgtt
gagcttttgaatgactggtttgcgaatggtggtgtgatgatcatgggctatgaggttttt
cgtatactgacacacacagatagcgcgaaatacagcaaacacaaagaagccttccgctca
atgctcctggatccaggccctgatctggtggtgtgtgacgagggtcatgtccttaggaac
gcagaatccagcatctcaaaagccatgcgagctctacgtacacgtaggagaatcatattg
acaggaacaccgcttcaaaacaaccttactgagtatcattgcatggtgaacttcattaag
gagaacctgctgggttctctaaaggagttccggaaccgttttattaatccgattcagaac
ggtcagtgcgcagactccacccctgctgatgtcagactgatgaagaatagatcgcacgtc
ctccatcagatgatgtcaggattcatacagagacgagactattcggtcttgatgtcctgt
ttgccgccaaaacacgagtatgtgctgtcagtccggatgacgcatctgcagtgtcgatta
tacacacactacctgcagaactacacagggaaaggagtaggtgtgaacagtttgtttcag
gaccttcatgttctgagtttgatatggactcatccctggtgtcttaaacttgctcagctg
agcaggaataagggcaaagaggaagtgcctgctcctgtcttcccaggtctgggtgcaggt
ttagtcggcagttctgtaaatccaaatgactctgaaaggagagatgcaacaagcacaggt
ttagtgggtgatggagagagaaataaggatccagtttccttgggcagcaggtccaatcaa
aatccacagcattcagatgtcacaaacacagccacaaccgaaatttctggtggggaagct
ggatttgttgtgggtaacgggccacctgccgactggtatatgcggtttataacagcggct
gatgccaaagtgctggagcattctgggaaattgcagttgctactggagattttacactgg
gcagagaaactacaggacaaagtgttggtgttcagtcagtctctgataacgctggatctt
attgagagtttcctcctgtatgcagatgagagcagggggaaaacatgttgtccgtacaaa
ggagagaaagcatgggttaaaaataaagattattatcgcttggacggcaacaccagtgct
tgtgctcgcaagagatgggctcaagagtttaacaacactaaaaacataagaggaagatta
tttctgatctctactcgtgctgggtcactgggaatcaatctggtcgctgcaaaccgggtc
gtggtgtttgacgcttgctggaatccgtcttatgacatccagagcatcttcagagtctat
cgctttgggcagaaaaaaactgtatatgtgtaccgctttctggcccaggggaccatggaa
cagaacatttatgagcggcaagtggctaaacagtcactgtcctctcgtgttctggaccag
cagcagattcagagacacttcacacacagtcagctgaatgagttgtactgcttccagcca
aacctgcagcccagtaaacacacagaaaggcctgtggatgacctgttggctcagatgctg
cagagctgtgggcagctcatagtaagttatcatgagcacaactcattgttagaccaccgg
gaggaagaggagctgagcgaggaagagcgcagagcagcctgggatgaataccgtgcagaa
aagaaggcctctacacagaactctaatgaagtcacccacagaaacgccaaccaggcacta
cagcaggctatggcttctctaaacttcgcctatacaaccaacagtgttccttcaactgct
tcattgcatgtgaaaccaggcaatgccgaaggttctgctgcttgggtcacttacaacaac
tccaatatcacatttcgactggagcatcccaatgtggttttctccgctccaagaacaaac
acataa
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