Carassius gibelio (silver crucian carp): 127958165
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Entry
127958165 CDS
T08819
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127958165
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127958165
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127958165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
ATPase
nSTAND3
PhoH
AAA_22
Ank_4
AAA_16
ABC_tran
Ank_5
Motif
Other DBs
NCBI-GeneID:
127958165
NCBI-ProteinID:
XP_052412925
LinkDB
All DBs
Position
B5:complement(10583285..10598522)
Genome browser
AA seq
1378 aa
AA seq
DB search
MSRGAHKSHTNPSKHTASLKAKGLKDIRIDEEVKISVNIALERFQYGDEKELDFPSSLTN
TERAFIHRLAQSLGYISKSRGKGSSRYLTVRKKDGTEASRSIMTFNLSHNSKHMVQSLLQ
RFPITNKERSELQPRTERAVFTSPDSSDSKSRTSGRLSHGISQVPQKRGPSDLDCFRRAL
PVFERQEEIIQTIRENQVVLVLGETGSGKTTQIPQFLLDDCCRSGIPCRIFCTQPRRLAT
IAVAERVAAERGEKIGQTVGYQIRLESRVSPKTLLTFCTSGVLLRTLMSGDEALSTVTHV
IVDEVHERDGLTDFLLTKMKELVQKTPSLKLILSSAALDVNLFVRYFGACPVIHIKGCPY
EVKQLFLEDILRTTGYISKDMMKYKKEAQREERQQTSLTEWCDARLDVLQPEAPREKTHT
CVLQENDLLDDGGDSVFSQTSEKDVATLEPWLLREMDACISNIFLNQDADAFVQLFNLIL
NENISVDYRHSETSVTPLMVSAGRGFLSQMEQLLSMGANANTKASNGWTALDWARHFNQT
EAVDLLESHIWCVEAGQLDEASLVQTAASELNPEDQELLKAYHHSFDDERVDLDLILHLL
FTIFQSSDEGAVLIFLPGYDEIVSLRDRILFDDKRFTDHQQRFQVFILHSSMQTSDQKKV
LKNMPKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDALSNVTMLKMVWISKASA
LQRKGRAGRCRPGICFHLFSRLRFNNMLEHQVPQLLRMPLQELCLHTKLLAPISCPIAEF
LSKAPEPPHLHTVKHAVQMLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKC
LDPILTIACTLAHRDPFVLPAQAAQKRAAMLCRKRFTANTFSDHMALLRAFQAWQKARSD
GWERAFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKA
ALVAGMYPNLIHVERDTLSLMSSREKKVRLHPTSVLSQPQYKKIPPANGQAAAVDSLPTD
WLIYDEMTRAHRIASVRCCSVVTPLTVAIFAGSAKLPSSALQEPAVHRGAGGEDDSSDSE
VEDRSCSRLAHISIDDWLHFRLQRETAEQVFGLRQRWHSLFLRRIRSPSKSCSQLDEATI
RSLVSVLLAEEQSTGLQQPTGIGQRPRPMTSDDPPQTASGRSAAQQEHSSPDRPRLASQL
KNHRALHSKHLGDESGPEKSTEGPSSPSSGTRCSSPSTHASRSSVRYFIMKSSNMRNIDL
SQQRGIWSTTPNNEHKLTRAFIESSAVFLIFSVQGSGHFQGYARMASAVSGERCLDWGSS
GLGGVFGVEWIRKESLAFQLTQQLLNPWNDNKRVQISRDAQELEPQTGSQLLQLWERL
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcggagctcataaatcacacactaacccgtctaaacacacggcttctctgaaa
gccaagggactgaaggacatccggatcgatgaagaggtcaagatttcggtgaatattgct
ctggagaggttccagtacggcgatgagaaagaactggattttccttcttcattgacgaat
accgagagagcgttcatacatcggctcgctcagtccctgggttacatctctaaaagcaga
gggaaaggctccagtcgatatcttacggtgaggaagaaggatgggacggaggcgtctcgc
tccatcatgacctttaacctctctcacaactccaaacacatggtgcagagcctcctgcag
aggttccccatcactaataaagagcgcagtgagctgcagccgcgcaccgagagagccgtc
ttcacgtctccggactccagcgacagtaaaagcaggaccagcggtcgtctgagtcacggt
atttctcaggttcctcagaagcgaggcccgtctgatctggactgtttccggagagctctg
cccgtgttcgagcgtcaggaggagatcatccagaccatcagggagaaccaggtggtgctg
gttttgggtgagaccggctccggcaaaaccacacagatccctcagttcctgctggacgac
tgctgtcggagcgggattccctgccggatcttctgcactcagcccaggaggctggcgacc
atcgctgtggcggagcgtgtggcagcggagcgcggagagaagatcggacagaccgtcggc
tatcagatccgtctggagagcagagtctctcctaaaacgctgctgacgttctgcacgagt
ggagtcctgctgcggacgctgatgtccggagacgaagccctgtccaccgtcacacatgtc
atcgtggacgaggtgcacgagcgagacggcctgacagacttcttactcacgaagatgaag
gagctggtccagaagacgccgtcgctgaagctcatcctgtccagcgccgctctggacgtc
aatctgttcgtcagatacttcggagcctgtcctgtcattcacatcaaaggttgtccatat
gaggtcaagcagctgtttctggaggacatcctgcgcaccaccggctacatcagcaaagac
atgatgaagtacaagaaggaggcgcagagagaggagagacagcagacgtctctgacggag
tggtgtgacgctcgtctagacgtcctgcagcccgaggctccgagggagaagacacacacc
tgtgtcctgcaggagaacgacctgctcgatgacggcggcgacagtgtcttcagtcagacg
agcgagaaggacgtggccacactggagccctggctgctcagagaaatggacgcctgcatc
tccaacatcttcttgaaccaagacgccgacgccttcgtgcagctcttcaatctgatcctg
aacgagaacatcagcgtggattacagacacagcgagacgagcgtcacgccgctgatggtg
tccgccggacgaggttttctcagtcagatggagcagctcctcagtatgggtgcgaacgcc
aacaccaaagcctccaacggatggacggctctggactgggccagacacttcaatcaaact
gaggctgtagatctgctggagtctcacatatggtgtgtcgaggcaggtcagctggacgag
gcgtctctggttcagacggctgcttcagagctgaatcctgaggaccaggagctgctcaaa
gcgtatcaccacagcttcgatgatgagagagtggacctggatctcatcctgcatctgctc
ttcaccatcttccagagctctgacgagggcgcagtgttgatattcctgccgggctacgat
gagattgtgtctctgagagatcgcatcctctttgatgataaaaggtttacagatcaccag
cagaggtttcaggtgttcatactacactctagtatgcagacgtcagaccagaagaaggtt
ctgaagaacatgccgaaaggtgttcgcaaaataatcctctccaccaacatcgcagagacc
agcattacagtcaacgacgtcgtgtttgtcatcgactcgggcaaagttaaagagaaggcc
tatgacgctctgagtaacgtgaccatgctgaagatggtgtggatctcgaaggccagcgct
ctgcagaggaagggcagagcgggccgctgcagaccaggcatctgtttccatctcttcagc
cgtctgaggttcaacaacatgctggagcaccaggttcctcagctgctgcgcatgccgcta
caggagctgtgtctgcacactaaactgctggcacccatctcctgtccgatcgctgagttc
ctgtcgaaagccccggagccgcctcacctgcacacggtcaaacacgccgtacagatgctg
aagacgatcgacgcgatggacccctgggagaacctgacggagctgggctatcacctcgcg
gatctgcccgtggagccacacctggggaagatggttctgtgtgcggtggtgctgaagtgt
ttggaccccatcctcaccatcgcctgcacactggctcacagagaccccttcgttctcccc
gctcaggccgctcagaagcgtgcagccatgctgtgcaggaaacgcttcaccgccaacacc
ttcagcgaccacatggccctgctgcgcgccttccaggcctggcagaaggctcgcagtgat
ggctgggaaagagccttctgtgagaagaacttcctctctcaggccaccatggagatcatc
gtcgggatgaggacgcagcttttgggacagctccgagccacagggttcgtgcgagcgagg
ggtggcggagacattcgggatgtgaaccagaactcggagaactgggccgtggtgaaggct
gcactggtcgctgggatgtatcccaatctgatccacgtggagcgggacacgctgagcctc
atgagctccagagagaagaaggtgcgcctccacccgacctccgtcctcagccagccgcaa
tacaagaagatccctccagccaatggtcaggcagcagctgtggactccctgcccactgat
tggctgatttatgatgagatgacccgtgctcacaggatcgccagtgtccgctgctgctct
gtggtcacgcccctcaccgtcgccatcttcgcaggaagtgccaaactccccagctccgcc
ctccaggagcccgccgtccacagaggagcaggcggggaggatgacagcagtgacagtgag
gtggaggatcgctcgtgttctcgtctggctcacatcagcatcgatgactggctccacttc
agactccagcgagagacggcggagcaggtgttcggtctgaggcagcgctggcacagtctg
ttcctgcggaggattcgctctccctccaagtcctgctctcagctggacgaggccaccatc
cgctcgctggtgtccgttctgttggccgaggagcagagcacaggcctccagcagcccacc
ggcatcggccagagacctcgacctatgacctctgacgaccctcctcagacggcgtccggc
cggagcgcagcgcagcaggagcacagcagcccagacaggcctcggctggcgtctcagctg
aagaaccacagagcccttcacagcaaacacctgggagacgagagcggccccgagaagagc
accgaagggccctcgtccccgtcctcaggaacacgctgctcgtctccgtccacacatgcg
tccagatcgagcgtccgctacttcatcatgaagagcagtaacatgaggaacatcgatctg
tcccagcagaggggaatctggtccacgacgcccaacaacgagcacaagctcacgcgagcc
ttcatcgagagcagcgcagtcttcctcatcttctccgttcagggatccggacacttccag
gggtacgcgcgcatggcgtcggcggtcagcggcgagcgctgtctggactggggttcgtcc
ggtctgggcggtgtgttcggggtggaatggatccgtaaggagagtctggcgttccagctc
acgcagcagctgctcaacccctggaacgacaacaagagagtccagatcagccgagacgct
caggagctggagccgcagacaggaagtcagttactgcagctctgggagcgactctga
DBGET
integrated database retrieval system
