Carassius gibelio (silver crucian carp): 127958587
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Entry
127958587 CDS
T08819
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127958587
03041 Spliceosome [BR:
cgib03041
]
127958587
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127958587
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127958587
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
Nup35_RRM_2
RRM_Nup35
RRM_3
DUF1866
Motif
Other DBs
NCBI-GeneID:
127958587
NCBI-ProteinID:
XP_052413438
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All DBs
Position
B5:complement(20504638..20513418)
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AA seq
386 aa
AA seq
DB search
MMDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDAAGNDPYCFVEFFEHRHA
AATIAAMNGRKIMGKEVKVNWATSPSSQKKDTTNHFHVFVGDLSPEITTDDIRAAFAPFG
RISDARVVKDLATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEIRVFPDKG
YSFVRFNSHESAAHAIVSVNGTSVEGHMVKCYWGKETTDMVSPMQQVQVPQQNKVGFAAQ
PYGQWGQWYGNAQQISQYVPNGWQVPTYGVYGQAWNQQSFNHIQAGAGWPGVSAVSNGGV
VEPAQGVNGTVLANHSSMGTAGYHTH
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgagcagcccaagaccctgtatgtgggaaacctgtcacgggatgtgacc
gaggcccttataatgcagctctttggtcaaattggcccctgcaagagttgtaaaatgatt
gtggatgcggcaggtaacgatccatactgctttgtggagttcttcgagcacaggcacgca
gcggccacaatcgcagctatgaacgggcgtaaaataatgggtaaggaggtaaaggtcaac
tgggctacttcacctagcagccagaaaaaagacacaaccaatcacttccatgtctttgtt
ggagacctcagtccagaaatcaccactgatgacatcagagctgcctttgcaccctttggg
aggatatcagacgcacgtgtagtcaaagacttggcaacggggaagtcaaaaggctatggt
tttgtctcattcttcaacaaatgggatgcagagaatgccattcagcaaatgggaggtcag
tggttgggcggcaggcagatcaggactaactgggctacaagaaaacccccagcgcctaaa
gcaacctatgaaacaaataccaagcacttgtcgtttgatgaagtggtgaaccagtccagc
cccagcaactgcactgtgtattgtggtggagtcactacaggccttacagaacaactcatg
agacagaccttttccccatttggtcaaatcatggaaattcgagtgtttccagacaaaggc
tactcgtttgtgaggttcaactctcacgaaagtgcagctcatgcgatagtgtctgttaat
ggcacgtccgtagaaggtcacatggtgaaatgttactggggtaaagagaccacagacatg
gtgagccccatgcagcaggtgcaggtaccccagcagaacaaagttggttttgctgcacaa
ccctatggccagtggggacagtggtacggcaacgcacaacaaattagtcagtacgtccct
aacggctggcaggtacccacttacggtgtgtacggacaggcctggaaccagcagagcttc
aatcacatacaggctggtgctgggtggcccggtgtgagcgccgtgagtaacggaggcgtg
gtggagcctgcgcagggagttaacgggaccgtgttagccaatcattccagcatgggcact
gcaggataccacacacactga
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