Carassius gibelio (silver crucian carp): 127958597
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Entry
127958597 CDS
T08819
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127958597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127958597
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
127958597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
127958597
NCBI-ProteinID:
XP_052413454
LinkDB
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Position
B5:20645346..20651389
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AA seq
507 aa
AA seq
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MSDEDEAPVVKKSRIFYGSLEEKEKDRLSREGISSAAKDAVKAAIEAGHINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKEDEKAKRTADEYQQTWYHEGPSSLKEARIWLAKYSLPRAVERLDA
ARAQKEIPESTRTVKQQELHKTLRNVNNFCSQIGDDRPISHCQFSPNSELLVTASWSGLC
KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVSMASCAADGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFARVWDLRTGRCIMFLEGHHQEIYSINFSPNGFHVATGSGDNTCKVWD
LRHRRCMYTIPAHENLVSSVKFQPNDGHFLLTGAYDSTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPNGQLIATCSYDRTFKLWMAE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagctccagttgtgaaaaagtccaggatcttctatggaagcctc
gaagaaaaggagaaggaccgtctcagccgggaaggaatatcttccgctgccaaagatgct
gttaaagctgccattgaggccggacatattaatatctccagtggtgagtctatggagatg
gaggagcgtgtgagtgagcgacaggctgaagtgctggccgagtttgagcgaaggaagcga
gcgagacaaatcacggtctctactgatgatgtagaggtcaaggcctgcctccgagctctt
ggcgagccaatcacgctgtttggggaggggcctgcagagagacgagagagactgaggaac
attctttcagtagttggtcccgatgccttgaagaaatcaaagaaagaggatgaaaaagca
aaacggactgcagatgagtatcagcagacgtggtaccatgaaggaccttcctctctaaaa
gaggcgcgtatttggttagccaagtattccctacccagagcagtggaaaggttggatgct
gcgagggcacaaaaagagattccagagtcgacgagaacagttaaacagcaagagcttcac
aagaccctgcggaacgtgaataacttctgcagccaaattggtgatgaccgtccaatatct
cactgccagtttagccccaactctgaattgcttgtgaccgcatcatggagtggcttgtgt
aaattgtggaaagtcccagattgtacacttatccgcacattaagaggtcacaataccaat
gtgggagcgattagctttcaccctcaagccacactcacactcgaggagtcggatgtcagt
atggcctcctgtgctgcggatggatctgttaaactgtggagtttagacagtgatgagcct
gtagcagacattgaggggcactctatgagggtggctcgggtggcctggcatccttctgga
cggttcctgggaacgacttgctatgataactcatggcgactttgggatcttgaagtccaa
gaagaaattctgcatcaggagggtcatagtaaaggtgtccatgacctgcacttccaccca
gatggctctttggcgggaactggtggtttggatgcatttgctcgtgtctgggacctgcgg
actggtcgttgcatcatgtttctggaaggacaccaccaagagatttatagcatcaatttc
tcaccaaacggctttcacgtagcaacgggaagtggagataacacctgtaaagtgtgggac
cttcgtcatagaaggtgcatgtacacaattcctgcccatgagaaccttgtgtcttcagtc
aagttccaacctaacgatgggcattttctgctgactggtgcatatgacagcacagccaaa
gtgtggacccatccgggctggtcacctctgaagactctggcgggacatgaagggaaggtc
atggggcttgacctttcacccaatggacagctcattgccacctgctcttatgacagaacc
tttaaactctggatggcggaatga
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