Carassius gibelio (silver crucian carp): 127959187
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Entry
127959187 CDS
T08819
Name
(RefSeq) putative ATP-dependent RNA helicase an3 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127959187
03041 Spliceosome [BR:
cgib03041
]
127959187
03036 Chromosome and associated proteins [BR:
cgib03036
]
127959187
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127959187
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127959187
mRNA cycle factors
Common to processing body (P body) and stress granule
127959187
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127959187
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127959187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127959187
NCBI-ProteinID:
XP_052414167
LinkDB
All DBs
Position
B6:697755..707395
Genome browser
AA seq
707 aa
AA seq
DB search
MSHVAVENVHGLDQQLAVLDLNSADQGVPGRRYIPPHLRNKEASKSDSPGGWDDGRSNGF
VNGNHEGRDNRMNGGGSFGGRGSMRSDRGGRGGFRGFGYDNKDAGGWNAQKDTAYNSFGG
RSDRGKSSFFSDRGSSSRGRYERGGFGGGGNNRWTDDSKNDEDWSKPLPPSERVEHELFS
GGNTGINFEKYDDIPVEATGQNCPPHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIP
IIKTKRDLMACAQTGSGKTAAFLLPVLSQIFNEGPGEALQAMKNSAQENGKYGRRKQYPI
SLVLAPTRELALQIYEEARKVAYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV
DMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKE
IQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATVDPNEVQDST
GENVEKPGKESLTLVFVETKKGADSLEDFLYREGYSCTSIHGDRTQRDREEALHQFRSGR
CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGN
ITKDLLDILVEAKQEVPSWLESLAYEHQHKSSSRGGRSKRFSGGFGARDYRQTSSGSSGG
GFGNRGARNTGGHGGNRGFGGGGGGFGNFYSSDGYGGNYSQVDWWGN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgagaatgtgcacggtctggaccagcagctcgctgttctagac
ttgaactccgctgatcaaggagtccctggaaggcgttacattccacctcatttaaggaat
aaagaagcttccaaaagtgattctcccggaggatgggacgatggacgcagcaatggcttc
gtgaacggtaatcatgaaggccgagacaaccgtatgaatggagggggcagtttcggtggc
cgtggctccatgcgcagcgaccgcggaggaagaggaggcttcagaggatttggttacgac
aacaaggatgccggtgggtggaacgcccaaaaagacacggcctacaacagcttcggcggc
cgctctgaccgcgggaagtcctctttcttcagtgaccgcgggtcttcatccaggggacgg
tacgagcgaggaggcttcggcggcggtgggaacaaccgatggacggacgactccaaaaac
gatgaagattggtccaaacccttgcctcccagtgagcgtgtggaacatgaactcttctct
ggaggcaacaccgggataaactttgagaaatacgatgacattcctgttgaagccacagga
cagaactgtccaccacatattgagagtttccatgatgtagatatgggagagatcattatg
ggtaatataaccctgagccggtacacacggcccactcctgtccagaagtatgccattccc
atcatcaagactaagagagacctgatggcgtgcgcacagacaggttctggtaagactgca
gccttcctgttgcccgtcctgagccagatattcaatgaaggaccaggagaggcgctgcag
gctatgaagaacagcgcacaggaaaatgggaaatatggccgtcgtaagcagtatcccatt
tcactggtcttagcccccacaagggagctggctctccagatctacgaagaggccaggaag
gttgcgtaccgctctcatgtgcgtccctgtgtggtgtacggaggcgctgatatcggtcag
cagatccgtgatctggagagaggctgtcatctgctggtggccactcctggacgtctggtg
gacatgatggagaggggcaagatcggcctggactactgcaattatttggtgctggatgaa
gcagacaggatgctggacatgggcttcgagccacagattcggcgtatcgtggagcaggac
accatgccgcccaaagggcttcgtcaaaccatgatgttcagtgccaccttccccaaggag
atccagatcttggctcgtgacttcctggaggaatacatcttcctggctgtgggcagggtt
gggtccacctcggagaacatcacccagaaggtggtttgggtcgaagaaaatgacaagagg
tccttcctgctggacttgctcaatgccacagtcgatccgaatgaggttcaggacagtacg
ggggagaacgtagaaaaacctggtaaagaatctctgaccttggtgtttgttgagactaag
aagggagcggactctctggaggacttcctgtaccgtgaaggctactcctgcaccagtatt
catggagaccggacccagagggaccgtgaggaagcgctccatcagttccgctccgggaga
tgcccaatcttagtagccacggctgttgctgctcgtggtctggacatctccaacgtgaag
cacgtcattaactttgacctgcctagtgacatcgaggagtacgtgcaccgcatcgggaga
accggtcgcgtggggaacctgggtcttgccacatcgttcttcaatgataagaatggaaac
atcaccaaggacctgctggacatcctggtggaggctaaacaggaagtgccctcctggctg
gagagcctggcctacgagcaccagcacaagagcagcagccgcggggggcgctccaagagg
ttttctggtggttttggggcaagagactaccgtcagaccagcagcggctccagcggcgga
ggattcgggaaccgcggcgcacgcaacaccggcggtcacggagggaaccgtggatttggc
ggcggtggaggtggctttgggaacttctacagcagtgatggctacggaggaaactattcc
caggtggactggtggggaaactaa
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