Carassius gibelio (silver crucian carp): 127959272
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Entry
127959272 CDS
T08819
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127959272
03036 Chromosome and associated proteins [BR:
cgib03036
]
127959272
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127959272
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127959272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
127959272
NCBI-ProteinID:
XP_052414295
LinkDB
All DBs
Position
B6:17779811..17826850
Genome browser
AA seq
1777 aa
AA seq
DB search
MEEKKTLEEETKKDTTQKTDTEQKTKVPDSVNPNSTIPSSPILSLNLPVPSAATTSNGKR
SPCYSLQHQLHPLQQPSPRYVPREVPPRFRQQEQRQLLKRGQPLPTGTLNPTSACTQSGV
ISPPETPTSKRHTGLSHQSGLRAQHENCLWSIPVSKSNSSNRDKVIINCNDTDTWPSNRY
GNSQQTPECTLNPERTSEVVSNSSSTIMATGASQQGHYPFSKASINLSSNMVSSQSGPTR
GWVSEGKIDLSMGSRGQSNWGASNLNLNPSANPAAWPALGHEGPGVGSGPSSMVCSNPLS
LSMCGQGGVAPPHGTNGNSCIGSMEIGNLVGDCAWGNPDVPEQHQSPTNVSFNMKPPNLT
SDGPNNTKPEPMSPVNSWRGNLSQSPTEPASEDGTAFWGNGNAKNAESKDAGWDSAGVSS
WGQGGGSSGGGWGDWGKQPSTEGTGWDANDGPSHDHMSSWGPDTPASEGSRDSSEGHPRR
RERSSSDDLAPLLPRQDLDPRVLCNTGWGQTPVRQHTVWEMEESPDKKNGAETDVWGSSS
NTPSSGPAPPPPGCASPNLSVPPRMETSKSEGSCRAIPNAGWGGSVSVSSQHNSGWGEPP
ANKKVPNGSQCSWGDPVAEGPNTSGSNGQSWAEEKSPSWNDGTSQKKTQGWGDGTKTSSG
WGSSGSGNSGEWGDPSEMRKNGSGSSSWDPDNRNWKETQRGWGKAAPAQSGSWGDAQHSN
GSAQGWGGKLQESTCGNGGAGGIGSWGSPNSEQQKQSNSGWASGGRQELGDEATGWEEPS
PSSIRRKMEIDDGTSTWGDPSAYSKSVNMWDRNNSQNNPGTSNSGNNNSLTGPNNNSKPH
QHHSQGPTQNHVSGSNNNGSPNQGESPLNRMPVVNPGWGEPSNVQPNSEPSSWGEPANSN
SSVDNGTSTWGQHSRGCGGWGEGGHDSSGPYGRGNAPAGSGSCQEGPKSMQDGWGSGGEE
LGMNTGQWDADDGDMWNSPTSQDTLCNSWSQSKKGPQRGKVFNRQDDVWIMTRLIKQLTD
MGFPKDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMSDYSNGMNKPVVCRPTNLSK
DHSLDRAPFLDKDGRLSDDASTSQFMPSPGLKLPLANSSLPSHGLGGVSSGLSMQNLNNR
QMQNGMFGTNGAAQTRVMQQQAPPPQPPVPPLSSAQPTLRAQVPQLLNPQVQAQLLQFAA
KNIGLNPALLTSPINPQQMTLLYQLQQLQVAYQRLQIQQQMMQAQRNVSGPIKQQEQQVA
RTITNMQQQIQQHQRQLAQALLMKQQQPPPSSHTGLHPNLGKASLDTFTGHPHTSCLSVS
DLQTKEQQSSPNSFSPYTLSGLNPNMNVNCMEVRSLSLKDQPQPQSRLSQWTHSNSIDSL
SASAQHLEANLNKHGSISSAQSHVPVGKNTMEDSFSPYNLMSSSESPTSTLVSPESWTQG
KSHNEKMSNNSNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIQDVNRY
LLRDRTGGKLLEMKSTWSPGPISHTQASLSHELWKGSPGTRNSCAPSRPPPGLTNTKPSS
TWGGNSLGLSQGWTSSYSSEGGTWSSDSPNRGSSWLVLRNLTPQIDGSTLRTLCMQHGPL
ITFHLNLTQGNAVVRYSSKEETAKAQKSLHMCVLGNTTILAEFAGEDEVNRFFAQGQSLT
PTTSWQASPAPGSNQPRLCNPAASHPTGLWSGGGGGTKTVCSTGNSSSGNGSDLLWGGVP
QYSSLWAPPNGDDTRVIGSPIPINTLLPGDLLSGESM
NT seq
5334 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaacgctagaagaagagacaaagaaggatactacgcagaaaacggac
actgaacagaaaaccaaagtgccagactctgttaatcccaattccaccatcccttcaagc
cccattctgtccttgaacctgcctgtaccctctgctgccaccaccagcaatggcaagcgt
agcccttgttattccctgcaacatcagttacacccattacagcagcccagtccccgatat
gtgcccagagaggttcctccacgcttccgacagcaggagcagaggcagctactgaagagg
ggtcaacctttacctacaggcactctgaacccgacctctgcttgcactcagtccggtgtc
atctcccctcccgagacgcccaccagcaaacggcacactggactttctcatcaaagtgga
ctgagagcccagcatgaaaattgtctttggagcatcccagtcagcaaaagcaacagcagc
aaccgtgataaagtgattattaactgtaacgacaccgacacttggccttccaatagatac
ggcaacagccaacagacaccagaatgcaccttgaaccctgaacgcacatcagaggtcgtc
agcaacagtagcagcactattatggctacaggagctagccagcagggtcattacccattt
agcaaagccagcattaatctctcttctaatatggtctctagtcaaagtggacccaccagg
ggctgggtctcagagggaaagattgacttgtccatgggcagtagagggcagtccaactgg
ggtgcctctaatcttaacttaaatcccagtgctaaccctgctgcttggccagcacttgga
catgagggtcctggggtagggtcaggccctagtagcatggtttgctcaaatccactttcg
ctcagtatgtgtggccaaggaggagtggcaccacctcatggcaccaatggaaatagttgc
attggttcaatggaaattggaaacctggtaggggactgtgcatggggcaacccggatgtc
ccagaacagcatcagtcacccacaaatgtatctttcaacatgaaacctcctaaccttaca
agtgatggaccaaataacactaaaccagagccaatgagtccagtgaacagctggagagga
aacctcagtcagtcacctactgagcctgccagtgaagatggaactgccttctggggcaac
ggcaatgccaaaaatgcagaatcaaaggacgcaggctgggattctgcaggcgtttcctct
tgggggcaggggggaggtagcagtggtggtggctggggtgactggggcaaacaaccaagc
actgaaggtacaggatgggatgcgaatgatggtccttcccatgaccatatgagttcctgg
ggccctgatactccagcaagtgagggcagcagggacagtagtgagggccacccacgaaga
agagaaaggtcctcaagtgatgatttggcccctttgctcccaagacaggacttggaccca
cgtgtcctctgcaacacaggctggggacagactccagttcgccaacacactgtttgggaa
atggaagaaagtccagacaaaaagaatggtgcagagactgatgtctgggggtcttcctcc
aacacaccttcatctggacctgcaccacctcctccaggatgtgccagtcccaacctcagt
gtacctcctagaatggagacaagcaagagtgagggatcttgcagagccataccaaatgca
ggctggggaggatcagtctcagtctcttctcagcataacagtggatggggggaacctcct
gcaaataaaaaggttcccaatggatcccagtgtagctggggtgatcctgttgctgaaggt
cccaataccagtggttctaatggccaatcctgggctgaagaaaagtcccctagctggaat
gatggtacttctcagaagaaaacacaaggttggggtgatggaaccaaaacttcctcaggc
tggggaagtagtgggagtgggaatagtggagagtggggtgacccttcagaaatgcgaaag
aatgggtctggaagttcctcctgggaccctgacaacagaaactggaaagaaacacagaga
ggatggggtaaagcagcaccagcacagagtggtagttggggtgatgctcaacattccaat
ggttcagcccaaggttggggtggaaaacttcaggaatccacatgtggcaacggtggagct
ggaggaataggatcatggggcagcccaaattctgagcaacagaaacagagcaactctggc
tgggcatcaggagggcgacaggagctgggagatgaggccacaggctgggaagaaccctct
ccttcttctattcgtcgcaaaatggaaattgatgatgggacctccacctggggggacccc
agtgcttacagcaagagtgtaaacatgtgggacaggaataactcccaaaataatccagga
accagcaacagtggcaacaataatagcctcactgggccaaacaacaatagcaagcctcac
caacaccacagccaaggtcccactcagaaccatgtcagtgggagcaacaacaatggttca
cccaatcaaggtgaatctcctctcaacagaatgcccgtggtgaacccaggctggggagag
cctagtaatgtacagccaaactccgaaccctcttcatggggcgagccagccaattctaac
tcttctgtggacaatggaacttcaacttggggccagcactctaggggctgtgggggatgg
ggtgaaggtggccatgactccagtggaccctatggtagaggaaatgcacctgctggatca
ggctcctgtcaggaaggtccaaaatctatgcaagatggctggggatcaggaggggaagag
cttggcatgaacactggccaatgggatgctgatgatggtgacatgtggaatagtcctaca
tcccaagataccttgtgtaactcctggagtcaatccaagaagggcccacaaaggggcaag
gtcttcaacagacaggatgatgtttggattatgaccagacttatcaagcagcttacagat
atgggttttccaaaggatcctgcagaagaagccctaaagagcaacaacatgaatctggat
caggccatgagtgctttgttggagaagaaaactgaactggacaaacggggaatgggcatg
tcagactacagtaatggaatgaataaacccgttgtgtgccgacccacaaacctctccaaa
gaccactcactggatcgtgcccccttcctagacaaggatggtaggctgtcagatgatgct
tcaacctcacagtttatgccttctcctggcctcaagctcccattggccaatagcagcctc
cctagccacggattgggtggggtctcctctggcctgtccatgcaaaacttgaacaacaga
cagatgcagaatggaatgttcggcactaacggagcagcacaaactcgggtcatgcaacag
caggccccgccccctcaaccaccagtgccacctcttagctccgcccagcctactctacgt
gctcaagtgcctcagcttctcaaccctcaggttcaagcacagctcttacagtttgcggca
aaaaacattggactgaatcctgcacttttaacctcaccaataaatcctcaacaaatgacc
ctgctgtaccaactacaacaactgcaggtggcttatcagcgtttgcagattcagcagcaa
atgatgcaggctcagcgtaatgtctctggtcccatcaaacaacaagagcagcaagttgca
cgtacaatcacaaacatgcagcagcagatccagcagcaccagcgtcagctggcccaggcc
ctgcttatgaaacagcagcagcctccaccttcctctcacactggcctgcacccaaatctt
ggcaaggcaagcctggatacttttacaggtcatcctcacacttcatgcctctccgtctca
gacctgcagaccaaagagcagcagtcttctccaaactccttcagtccttatacactctct
ggtttgaacccgaacatgaatgtaaactgtatggaggtgagaagtctatctcttaaagac
caacctcagcctcaatcccggctctcgcagtggactcattcaaactccatagattccctg
tcagctagcgctcagcacttggaagcaaacctcaataagcacggttcaatctcttctgct
cagtcccatgttcctgtcggaaagaacaccatggaagattctttcagcccatacaatttg
atgtcaagctccgaatcccccaccagcaccttggtgtctccagagagctggacacaaggc
aaaagtcacaatgagaaaatgtctaataactccaatatcaactggcctcctgaattctgc
cctggggtgccatggaaaggtcttcagaacattgaccctgagaatgaccccaacatgacc
ccgggaagtgttccaagtggccccaccattaacactaacatacaggatgtgaatcgctac
ctgttacgtgacaggactgggggaaaactcttggaaatgaagtctacctggtcccctgga
cccatctcccacacacaggcctctttatctcatgagttatggaagggttctccagggaca
cgtaactcctgtgctccctcacgcccccctccaggcctgaccaacaccaagccctcctcc
acctggggaggaaactctcttggcctcagccagggctggaccagctcttactcctcagaa
gggggaacttggagctctgacagtcccaacagaggaagcagctggctggtgctgagaaac
ctcactcctcagattgacggctccaccctgcggactctgtgcatgcagcacggccctctc
attaccttccatctgaacctgacgcagggcaatgctgttgtacgttatagctccaaggag
gagactgccaaagcccaaaaatccctacacatgtgtgtgctgggtaacactaccatcctg
gcagagtttgccggtgaggacgaagtgaaccgcttctttgcacagggccagtcccttacc
cccaccaccagctggcaggccagcccagcaccaggctccaatcaaccccggctgtgcaac
cctgctgccagccaccccacaggcctctggagcgggggtggaggaggtaccaagaccgtc
tgcagtaccgggaacagcagcagcggaaacggaagcgacctgctgtggggaggtgtgcca
cagtactccagtttgtgggctcccccaaatggagacgacaccagggtaatcggcagcccc
atcccaattaacactctgctcccgggagaccttctgagcggagagagcatgtag
DBGET
integrated database retrieval system
