Carassius gibelio (silver crucian carp): 127959301
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Entry
127959301 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
127959301
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127959301
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127959301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
TRAF2_zf
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127959301
NCBI-ProteinID:
XP_052414338
LinkDB
All DBs
Position
B6:7206162..7289606
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AA seq
1055 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCSEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLDNHCCLKALKAHNGALQGKVVSLD
KELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSISPPCKGG
ETKSVTAILHRESGSLGFNIVGGRPCADNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKPMGPSGEAQVVDISTQTDIT
FQHIMALSKLPTSSPPVDVLEQYLLPEGHSPAHEYFDPNDFLEGMQHEIEREELEYEEVE
LYRTNIQDKLGLTVCYRTDDEDETGIYVTEIDPNSIAAKDGRIRQGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSHHHEKDSGVGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRRLAYSQDTLGSGDLPFSSESFISADYADADFLGDFPADECERFRELLELKCQMRSAG
SSANPEQSLFWPSGGVGGGQGSVGEEGVDKELELLNEELRSIELECLSIVRAHRMQQLRE
QCREQSWMLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLE
LSPDNSLRRGNENQVEAGASSGTSGASRILKPLLSPVQEACSPNRSRPTLSKESEAGTQP
EVRERKAGRHAQPQSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAQSQMSLVSMCRDPVAS
ADLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAISEMKMGRY
WSKEERKQHAVRAKEQRQRREFMKQSRMDCLKEQVGSAEDKKEVNIIELSNKKMMKKRNK
KIFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgtttcaagggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggatcctctcactaccccgtgcggtcacgtcttctgcgccggc
tgtgtgctgccgtgggtcgtccagcagagcagctgcccggtcaaatgccaaaggatctcc
accaaagagctcaaccacgtcctccctctgaaaaacttgatattaaagttagacattaaa
tgtgacaatcacgcgcggggctgcgagaagatcgtcaaactccagcatctggcggagcac
gcggagatgtgcgattattcccctgccaaatgtaggaataagggctgcagcgaagtgctc
aaccttaaagatatggatgcccacatgcgtgaatcgtgtgattacagagcggtcgggata
tgcgagagtggatgcggattgatgctcactcataaggagcagaagttggacaaccactgc
tgcttgaaagccctcaaagcgcacaacggcgcgctgcaagggaaagttgtcagcttggat
aaggagctgaagaaacaagctctcaaatcgactaaaagagagaaatcgcttctggctcaa
ctgtcggctgttcataacgagcttcagatgacagcgctgaagtatcagaagaaattcact
gaatacagcgccaggattgactctctatccaagagcatctctccaccgtgtaagggtgga
gagaccaaaagtgtcacagctatactccatcgtgagtctggatctttaggcttcaatatc
gttgggggacgaccatgtgctgataataaagatggcacttcgaatgaaggaatctttgtg
tcgaagattgtggaaaatggaccggcagataaagaagggggtttacagatccatgacagg
ataatggaggtcaatggaaaggacttgtccaaagcaacgcatgaccaggctgtggaggcc
ttccgtacagctaaagaacccattatggtccaggtgctacgccgggctcccaggcccaag
cctatgggcccaagtggggaagcacaggtagtggacatcagtacccagacagacatcacc
ttccagcatatcatggccctcagcaagctgcctacatcctccccacccgtggatgtgctt
gagcagtacctgctgccggagggacactctcctgctcatgaatacttcgaccccaatgat
ttcctagagggcatgcagcatgagatagaaagagaagagctggaatatgaggaagtggaa
ttatacaggactaatatccaggataaactggggttaactgtgtgctacaggaccgatgat
gaagatgagactggcatctatgtcactgagattgatccgaacagcatcgctgcaaaagat
ggacggattcgacagggagatcgaatcatccagatcaatggcattgagattcagaaccgt
gaggaagcggtggctcttttaaccagtgaagaacacccaaatgtgtgcctgctattggcc
cgaccagagatacagctggatgaaggctggatggatgatgacagaaatgactacctggat
gacctccacatggatatgttagagcaacaacaccatcaggctatgcagttcacagcaagc
atgctccagcagaagaagcatgaggaggatggaggtacaacagacactgctacgctgctc
tcccaccaccatgagaaggacagtggagtgggccgcacagacgacagcactcgtaacgat
gagagctctgagcaggagaatcttgcagatgaccagaccagcgcctccacaacactaggc
agccggcgcaggctcgcctacagtcaggacaccctaggcagtggtgaccttcccttcagc
agcgagtccttcatttctgcagactatgcggatgcggatttcttgggtgactttcctgct
gatgaatgcgagcggtttcgtgagcttttggagctcaagtgccagatgcggagcgcgggc
agcagtgccaacccagagcagagcttgttctggccaagtggtggcgtaggtgggggacag
ggcagcgttggtgaggagggtgtcgacaaagagctggagcttctgaatgaggagctccgc
agcattgagctcgagtgcctgagcatagtccgagcgcatcgtatgcagcagttgcgtgag
cagtgccgcgaacagtcctggatgctccacaacagcggcttccgcaattacaacacaagt
gtggatgcaagacgccatgagctagcggacatcagtgaactcccagaaaagtcagacaag
gacagctccagcgcatacaacacaggcgaaagctgtcgtagcacgccgctcactctagag
ctctccccagacaactccttgcgacgtggaaatgaaaatcaggtggaagccggagcaagt
agtggtacctcaggtgccagtagaattctcaaacctctgttgtcgcccgtccaagaggct
tgcagccctaacagaagtcgtccaaccttgtcaaaagagtcagaggctggaacccagcct
gaagtccgagaacgcaaagctggtcgccatgcccagccccagtcgccctacaaacatgcc
cacatcccggcccatgcccagcactaccagagctacatgcaactgatccagcaaaagtcg
gtggagtatgcccaaagtcaaatgagcctagttagcatgtgcagggaccccgtcgcttct
gctgacttggaacccaaaatggaatggaaagtgaagatccgcagtgatggtacacgctat
attacaaagcggcctgtccgggacaagctcctgaaagagcgagccctacgaatccgagag
gagcgcagtgggatgactacagatgacgatgccatcagcgagatgaagatgggacgctac
tggagcaaagaggagcgcaagcaacacgccgtccgtgccaaagagcagcgtcagcgcagg
gaatttatgaagcagagccgtatggactgtctgaaggagcaagtgggcagtgctgaagac
aagaaggaggtcaatatcattgaactgagtaacaaaaagatgatgaagaagcggaacaag
aaaatctttgacaactggatgactatccaggaactgttgacccatggtacaaagtccccc
gatgggacgcgagtgtacaactccctgctgtcagtgaccacggtgtag
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integrated database retrieval system
