KEGG   Carassius gibelio (silver crucian carp): 127959498
Entry
127959498         CDS       T08819                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    127959498
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgib03019]
    127959498
   03036 Chromosome and associated proteins [BR:cgib03036]
    127959498
Messenger RNA biogenesis [BR:cgib03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     127959498
Chromosome and associated proteins [BR:cgib03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     127959498
    COMPASS/SET1 complex (yeast)
     127959498
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N Beta-prop_HPS5 PQQ_2 VPS8_N MinC_C
Other DBs
NCBI-GeneID: 127959498
NCBI-ProteinID: XP_052414677
LinkDB
Position
B6:complement(8541262..8546502)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLQYERTCEWTGLKFSNDGKLILVSTNGGALRVLDAFKGAVLHSFGGYNNSKG
VILEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctcacagacaatgtgctgcggagtttcagggttgcgaaggttttccgagagaac
tcggacaaaatcaactgctttgacttcagttctaatggcgaaactgtaatatcgagtagc
gatgacgattcgattgtcttgtacgactgccaggagggaaaacccaaacggacactttac
agtaagaagtatggtgtggatctcatcagatacactcatgccgccaacactgtcgtctac
agctccaacaagattgatgatactattcgatacctgtccctacatgataataagtacatt
cgatactttcctggacacaataagagggttgttgctctgtctatgtctcctgttgatgac
acattcatttccggctcacttgataaaactattcgtctgtgggaccttcgctcacctaac
tgtcagggcctcatgcacctgcaagggaagcctgtgtgttcatttgatccagaggggttg
atttttgctgcaggagtgaattctgagatggtcaaactttacgatctacgctcctttgat
aagggtccattcgccacatttaaactacagtatgagcgaacatgtgaatggacgggtctc
aagttcagcaatgacggaaagctcattctggtctccaccaatggtggagcgctcagagtg
ctagatgccttcaaaggagcagtgctccactcatttgggggctataacaacagtaaaggt
gtcattctagaggcttctttcacgccagactctcagttcgtcatgatcggatctgaagat
ggaaagatccatgtgtggaatgctgagagtggaatgaaagtagcacttcttgatgggaag
cacactggtccagtcacctgtctacagtttaaccccaaattcatgacctttgccagtgcc
tgttctaacatggcattctggttacctacgattgatgactga

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