Carassius gibelio (silver crucian carp): 127959571
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Entry
127959571 CDS
T08819
Name
(RefSeq) collagen alpha-1(VII) chain-like isoform X1
KO
K16628
collagen type VII alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127959571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Interfer-bind
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
Motif
Other DBs
NCBI-GeneID:
127959571
NCBI-ProteinID:
XP_052414779
LinkDB
All DBs
Position
B6:9121806..9177012
Genome browser
AA seq
2963 aa
AA seq
DB search
MGCLLQWTLLLAVLLCLPSPSTAQGQCNNVVAADIVFLVDGSSSIGRANFVLVKNFMAGI
VKPFTRVVGPSGIRFGTIQYSDTARVEFTFTTYLNGTELITAIENINYKGGNTRTGAGLK
YIADNFFSPSSIRDVPKITILITDGKSQDSVKEPSQKLRSLGVKIFAVGIKSADPAELKL
IASPPQSEFTSQIGNFRALSSLLPLVSRRVCTTTGGSYSSDEAYSGPSDLQFSSETTNSL
RFQWKSAGGPVSGYVVQYRPLSGLGQPITAELRQETIPSDQQSYTAGELHSGTDYLITVI
AQYPNSLGESVSGKAQTKPLQGVTALRLIQAGFFTLALGWDTPADQVQGYRITYGPIGQP
AAQLQEQSVGAESTSLTLVSLKSDTEYLISLYPLFPRNSASPATLTARTLRLEGVQQLSV
ETISSSSVRVRWTGVAGARGYRIVWGPFTGSDVETIELGGDSESHTLGNLRPDAEYIVTV
ITLYSGEAEGPAATARFKIERSEQQVLRATTTGPTSIRLNWNLIQAARGYRLEWRAGERG
RVQKQEFPKSTTNYELKSLQPNTEYIITLYTLYEGREEATIFSTKPTVEQQVGPVTNLRV
VDSLGNTIRLGWTGVSGATQYNIIILNTESNAEVNRRVPGNQTTFDLRDLEDGVRYAVSV
NALIGSKEGEQATVYIVTEPPLRVTNLRIVGSNSRRVRIAWTGVSEATGYRVTWRQSNTA
EQSRVLGGDITTYTIDGLQPDDSVVVGVAPVVNGYTGEVVSVSTRTSGSNGIVTGLRVIE
VTSARIVISWTPVTRATGYKIIWRRSDGVEDSEIVPADVVFYGIERLQEGAAYQILVSAL
FNSREGPSATVTASTDQVTVGRVTNLQVVEAQGEVVRISWVGVQNATSYRILWKRTDGGE
EQSQLVGGNVTSVDLRQLDEGAQYEVKVLAIVRNREGPPVSVRVTTGSQRGTRVEGLRVL
DSTPGGLRITWRAVRGASSYRIYWRSSQGEPESSRLISGDATSYSLDGLRPGLSYTVRLS
AIVEGQETEATTIRATTDALPPVTGLTVTDSTENSVLLGWSPVTGATGYILRWTEKEDTG
TGQSETLPGTATSYRVTGLRLGRQYRFTLQPTFQNQVGPETSVTERTVCVGGRLDVVFLV
PASRDRSGLVGPVLSLLASSAGSLTSIGPRDSQMGVVMYSEDPKVRFPLNRHSNSETLLQ
DILTTPFNDRPGNNIGQAMTYARQFLLSAPEGRRYSVPGVVVIIADEKSTDDLSQPAAAV
RADGVTVLAVGIGRADTRELRLAVTDGSTQNLLYAQDADQLYGLHPDLADLLCGLARGTS
VTPGPCTVQCHQGAKGELGQKGERGRDGVDGRKGEPGRDGLPGREGPRGPEGPPGQPGSS
LGVRGEKGERGFPGLDGSPGVPGRPGAVGLPGIQGLAGVRGDPGEPGLLGPQGLKGEKGE
RGEPGSADGGGLPGRKGEPGIPGIPGTPGRSGVDGAKGEPGARGLSGLDGLPGLPGTDGL
SIKGEKGSPGERGPPGVGSGVAAKGDGGEPGSPGPPGPQGPRGLNGQKGAKGESGESTEG
KPGPQGNTGDPGDRGPRGPPGEIGSKGDRGQTGPPGSDGAKGDRGLPGPAGDKGDKGSAG
PPGPQGLRGLSGSSGLPGEKGAEGEKGQPGSCDCQSSFGKKGERGERGLPGLAGSKGDKG
DAGQKGERGVPGAGEPGQPGPKGDQGDRGFTGLSGKHGVKGNQGDPGERGETGSPGPQGP
MGPRGKDGLRGDKGEDGIPGESGLAGKPGERGLRGLPGQPGQSGPKGDTGDPGEDGRNGT
PGPTGPRGPKGEQGIQGPPGPPADVTSGEKQLKGDRGEKGEAGDPGEHGGKGQKGEPGVS
GPQGPSGPEGPRGLSGARGDQGDRGSPGDKGERGAAGLDGRPGQDGKPGPPGAPGLRGDP
GKQGDPGRDGLAGLRGPQGPLGPPGPPGDNGTPGKAGVDGKPGLPGKPGEDGVPGEDGRK
GDKGESGPAGRDGRDGLKGDQGIAGPIGPQGPIGPPGVPGNAGPPGHVVYVKGELATPIP
GPQGPPGAPGVPGIPGNAGQRGERGLPGLKGDVGDPGEDGRPGNVADVKKAFSEFGIEVK
ELKLLIDDRGNLISQLNELMKGKRGEKGDVGPRGPAGADGARGFPGERGVKGEQGDKGPA
GPQGPPGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEAGRPGEKGGKGEKGDRGL
AGPAGLPGLGGPPGPKGDSASAQSGLPGARGLPGPQGIRGEAGPVGPPGPTGERGYTGPR
GEKGDKGASGESGKDGSPGSPGDPGKPGPDGKPGLPGFPGVLGRPGNPGEPGIRGPTGPM
GGNGPPGAPGVKGDPGEPGIGVQGPPGPQGNRGLPGPSGTPGAIGPQGPPGLPGQVGEGG
KPGVPGRDGVPGKDGLPGLSGKQGIAGPIGPSGLKGEQGDIGPPGKSVTGPPGKKGEMGP
PGLTLPGTAGERGLPGSPGPKGDKGPAGIKGERGAAGDPGDPGENGLRGQPGLKGVKGEA
GVGMSGPPGQPGPTGLKGDPGLPGPPGPPGPRGLDGTPGLAGQRGEAGQPGPPGPPGDRG
QQGFIGKDGNPGSPGGVGPPGPPGNAGLAGLKGNKGEIGVGVPGLRGERGDPGPRGEEGR
SGTDGERGPSGPPGSKGNRGDKGEQGPSGIKGEKGDTQLVGGPPGEKGVKGETGERGPKG
AQGEKGAKGQEGPPGEQGLRGEPGERGSTGFRGARGPGGQKGEAGQPGVPGEAGTPGKDG
LPGMRGEKGEFGPVGSRGLKGERGAKGACGQSGAKGDKGDAGINGRPGLPGKKGEQGEVG
SPGPTGSPGKEGLIGDKGDRGFDGVTGSKGSQGEKGERGQPGIPGPTGPRGADGPPGLTG
PQGPSGGKGPEGLQGQKGERGPPGPAMVGPRGIPGIPGVTGEQGEIGPDGPKGDRGEPGM
TEDEIRTYVRSEMNLHCACGGKL
NT seq
8892 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtttgctgcaatggactctgctgcttgctgtgttgctttgtctcccatcaccg
tctactgctcaaggccagtgcaataatgttgttgcagcagacattgtgttcctagtagat
ggatcatccagtattggccgggccaactttgtgttggtcaagaatttcatggcagggatt
gtcaaaccctttaccagagtggtaggacccagtggcattcgtttcggaaccatacagtac
agcgatactgccagggtggagtttacatttactacatacctgaatggaaccgagctcata
actgccatagagaatatcaactataaaggtggaaacacgcggactggggctggtctcaaa
tacatcgcagacaacttcttcagcccttcctctatcagagatgtacccaagatcactatt
ctcattactgatggtaaatctcaggacagtgtgaaggagccttcccaaaaactacgtagc
cttggagtaaaaatatttgcagtgggtataaagagtgcagacccagctgagctgaagctc
attgcctctcctcctcaaagtgaattcacctctcagattgggaatttcagagctctcagc
tcattgctgcccctagtgtctcgacgtgtgtgtacaacaactggaggctcttactcaagt
gatgaagcctacagtggtccatcagacttgcagttttcaagtgagaccaccaattcactg
agatttcaatggaagtctgcaggagggcctgtaagtggctatgtggtccagtacaggccc
ctatctggcctgggtcagccaatcacagcagagcttcgacaggaaacaataccaagcgac
cagcagagctatactgcaggagagctgcattcaggcacagactacctgatcactgttatt
gctcaatacccaaacagcttgggagagtcagtgtctggcaaggcccaaacaaagcctctc
caaggtgtgactgcactgcgactgatccaggccgggttttttactctggccttgggctgg
gacactccagctgaccaagtacagggttacagaatcacctatggacctataggtcagcct
gctgcacagctgcaggaacaatctgtgggggcagagtctacttctctgactttagtcagt
cttaagtcagatacagaatatctgatcagcttgtaccctctgttcccccgtaacagtgcc
tcacccgctaccctgacagcccgcacattgcgtttagagggagtacagcagctttctgtt
gagactatctcaagcagcagtgttcgagtccgctggacgggagtggcaggggccagagga
tatagaatcgtttggggccctttcacaggaagtgatgtggagacgatagaactgggaggt
gatagtgaatctcacactctggggaatctgagaccagatgcagagtacattgttacagtc
atcactctgtacagcggagaagccgaaggaccagcagccactgcacgttttaagatagag
cgctcagagcaacaggtcctgagagccacgactacgggacccaccagcatcagattgaac
tggaaccttattcaggccgccagaggctaccgactggaatggagagccggagagagaggc
agagttcagaagcaagagttcccaaaaagtaccaccaactatgagctcaaaagtctgcag
ccgaacacagagtacatcattactctatacacactctacgaggggcgagaagaagctact
atcttttcaaccaaaccaacagtagagcagcaagttggtcctgtcacgaatctgagggtg
gtggattcactcggaaacacaattcgattaggatggacaggagtctctggagcaacacaa
tacaacatcattattcttaatacagaatcaaatgcagaggtgaacagaagagttcctggg
aatcagaccacttttgacctacgggatcttgaagatggtgtacggtatgctgtcagtgta
aatgcactaattggatccaaagaaggggaacaagcaacagtgtacattgtaacagaaccg
ccactgagggtgaccaacttgcgaatagttgggagcaacagtcgacgagtcaggattgca
tggactggtgtttcggaggcaacgggctaccgggttacctggagacaaagcaacactgca
gagcaatctcgtgtcctaggtggtgatatcactacctacactatagacggcttgcagcca
gatgattctgttgttgtgggtgttgccccagtggttaatgggtatactggagaagtggtc
tctgtgtctacaagaaccagtggttctaatggaattgttacagggctaagagtcattgaa
gtaacatctgcaaggatagtaatatcctggactccagtgactcgagcaacaggctataaa
ataatctggcggcgaagtgatggagtggaagactctgagattgtacctgctgatgtggtt
ttctatggcattgaaagactccaggaaggggcagcttaccaaatattagtctcagccctt
tttaactcaagggaaggaccttctgccactgtgacagcaagcacagatcaggtcacagtg
ggtcgcgtcactaatttacaggtggtggaggcccaaggggaggttgttcgaatcagctgg
gttggagttcaaaatgcgacttcatacagaatactctggaagaggactgatggtggagag
gagcagagtcagctggttggaggtaacgtgacctcagtggatctgaggcagttggatgaa
ggggcacagtatgaagtgaaggtcctggctatagttcggaacagagaaggcccacctgtc
tccgtcagagtcactacggggagccagagagggacaagagtagagggtttgcgtgttttg
gactcgaccccaggggggctccgtataacctggagagcagtgcgtggagccagctcatat
cgaatctactggagatcctcacaaggtgaacctgaatcaagtcgtctgattagtggcgat
gcaacttcatacagccttgatgggcttcgacccggtctgagctacactgtaagattgtct
gctatagtggagggtcaagaaactgaagctaccaccatcagagcaaccactgatgccctg
ccacctgtgactggtttgactgtgactgacagtactgagaattcagtccttttaggctgg
tcaccagtaacaggagccacaggatatattttacgctggacagagaaagaagacacagga
acgggtcagtctgaaacactgcccggaacagccacttcttaccgtgtgacaggtctacga
ctgggccgtcagtaccgtttcaccctgcagcccaccttccaaaaccaggttggacctgag
accagcgtgactgaacgcacagtgtgtgtgggagggcgtttggatgttgtcttccttgtc
cccgcatctcgtgatcgttctggcctggtgggacctgtgttgtctctgcttgccagctct
gctggatccttaacctccatcggacccagagactcccagatgggggtggtgatgtacagt
gaagatccaaaagtgcgcttccccctcaatcgtcatagcaacagtgagaccctgctgcag
gatattttgaccaccccattcaatgacaggccaggaaataatataggccaagcaatgaca
tacgcacgtcagtttttgctgagcgcaccagaaggtcggcggtatagtgttcccggggtg
gttgttattatcgcagatgagaagtcaactgatgatcttagccagcccgctgctgctgtt
agagctgatggtgtgacagtgttggcggtaggaattggacgtgcagacactagagagctg
cggttggcagtgacggatggcagcactcagaacctgctctatgctcaagacgcagatcag
ctctatggcctccaccccgacctggcagacctcctctgtggtcttgcacgtgggactagt
gtcacgccagggccttgtactgtacagtgtcatcaaggtgctaaaggggaactgggtcag
aagggtgagaggggcagagatggagtagatggaagaaaaggcgagcctggtcgtgatggt
ttacccggtcgtgagggccccagaggaccagaggggccaccaggtcaaccaggcagcagt
ctgggagtgagaggagagaaaggcgagagaggtttcccaggactggatggcagtccaggt
gttccaggccgtcctggtgcagttggattacctggcattcagggattagcaggtgtgaga
ggagaccctggagaaccaggccttttaggccctcagggattaaaaggagagaaaggtgaa
aggggagaacctggatctgctgatggaggaggtttaccgggccgtaaaggagagccagga
atcccagggatccctggtactcctggtcgttcaggtgtggatggggcgaagggagagcca
ggtgcacgaggtctgtccggactggatggactccctgggttgccaggcactgatggactt
tctattaagggtgaaaaaggcagccctggtgagaggggtcctcccggagtgggtagtggg
gtagctgctaaaggagatggcggtgaacctggaagtcctggaccgcctggtcctcagggc
ccacgaggactgaatggacaaaaaggagccaaaggagaatctggtgagagtactgagggt
aaaccaggcccccaaggaaacaccggagaccctggtgatcggggtccccgaggacctcct
ggtgaaatcggaagtaagggtgatcgaggacagactggaccacctggttcagacggagcc
aagggagacagaggccttccaggtccagcaggagacaagggagataaaggttcagctggc
ccccctggacctcaaggattgaggggattgtcagggagcagtggccttcccggagaaaag
ggtgctgagggtgaaaaagggcaaccaggaagctgtgactgtcagagttcatttgggaag
aaaggagagcggggtgaaaggggcctcccaggacttgctggcagtaaaggtgataaagga
gatgcaggacaaaaaggggaaaggggtgtccctggagcaggagagcccggccaacctgga
cctaaaggggaccagggtgatcggggtttcactgggttgtctggaaaacacggtgtgaag
ggcaatcaaggtgacccgggggagagaggggagacaggaagtcctggtccacaggggccc
atgggccccagagggaaggatggactacgaggagacaaaggagaggatggcattccagga
gaatcagggttggcgggtaaacctggggagagaggtctaagaggactgccaggtcaacca
ggacagtctgggccaaagggagacacaggggatccaggggaagatggaagaaatggcacc
ccaggtcccaccggaccaagaggcccaaagggagaacagggaatacaaggtccccccggg
ccacctgctgatgtgacatctggagagaaacaactaaaaggtgacagaggagaaaaggga
gaggcgggtgacccaggggagcatgggggtaagggtcagaagggtgaaccaggagtttca
ggcccacaaggaccaagcggtcctgaggggccgcgtgggctatcaggagccagaggtgac
caaggcgataggggtagtccaggagacaagggagaaagaggagcggctggtttggatgga
cgacccggtcaggatgggaaacctgggcctcctggagctcctggattacggggtgaccca
ggaaagcaaggggatcctggaagagatggcttggcgggactaagagggcctcaggggccg
ctaggaccacctgggcccccgggagataatggcacacctggtaaagcaggggtggatggg
aaaccaggactgccgggaaaacctggcgaggatggtgtgccaggagaggatggtcgaaag
ggagataaaggagagtcggggcctgctggaagagatggccgagatgggttgaaaggtgat
caggggattgcaggacctattggtcctcaaggtcccattggaccccctggagttcctgga
aatgctggaccaccaggacatgtggtgtatgttaaaggggagctagcaacacctattcca
ggcccccagggccctccaggagcccctggagtacctggaattccaggaaatgctggacaa
agaggggagagaggtctgccaggcttgaaaggagatgtgggtgatccaggagaggatggc
agaccaggaaatgtagcggatgtgaagaaagctttttcagaatttggcattgaggtcaaa
gaactgaaactattaattgatgacagaggcaatctgatatcacagttgaatgaactgatg
aagggaaagaggggcgaaaaaggagatgtcggacctagaggccctgcaggagcagatggt
gcaaggggttttccaggtgaacgaggtgtgaaaggagagcagggtgataaagggcctgct
ggcccacagggtcctccaggcagggcaattggagaacgaggcccagaaggtccaccagga
caggcaggtgaacctggaaaaccaggaataccaggagtaccaggacgagccggtgaactc
ggagaagctggcagacctggggaaaaggggggaaaaggggagaaaggtgacagagggcta
gctggtccagctggattgcctggcttaggggggcctccaggaccaaagggggattctgca
tctgctcagagtggtttgcctggtgcgaggggtcttccaggaccccaaggtatcagagga
gaggctggtccagtaggacctcctggacctacaggagagaggggctacacaggtcctcgt
ggggagaagggagacaaaggagccagtggagaaagtggaaaagatggctccccaggaagt
ccaggagacccaggaaaaccagggccggatgggaagccgggcttgcctgggttcccagga
gtgctgggcagaccggggaatccaggagaaccaggaataagaggaccaacgggacctatg
ggcggaaatggacccccaggggctcctggtgtgaagggtgacccaggagaaccaggcatt
ggagttcaaggccctcctggacctcagggcaacagagggttacctggaccttcaggcact
ccaggagcaataggaccacaaggacctccagggcttccaggacaagtgggagaggggggc
aagcctggggtcccagggagagacggtgttccaggaaaagatggcctgccagggttatct
gggaaacagggtattgccggacccattggcccctcaggattaaaaggagagcagggagac
atcggtccaccaggaaagtctgtcactggaccccctggaaagaagggtgagatgggtcct
cctggtctgacattgccaggtaccgctggagaaagaggccttcctggatcaccgggtcca
aagggagacaaagggccagcgggaatcaaaggagaaagaggtgctgcgggtgatcctgga
gatcctggtgagaatggattgagaggacaaccagggctcaaaggagtcaaaggagaagct
ggtgtgggaatgtctgggcctccaggacaacctggacccactggcttaaagggtgaccct
ggcttaccaggtcccccgggccctcctggaccacgtggattggatggcacgccaggactg
gcagggcagagaggtgaagcaggtcagccaggaccccctggaccaccaggagacaggggt
caacaaggatttattggcaaagatggaaacccaggatcaccaggaggtgttgggccccca
ggaccccctggtaatgcgggccttgcaggactgaagggcaataaaggtgaaattggagta
ggagtgccaggtttaagaggagagcgaggagacccagggcctcggggagaagaaggtcgg
tctggaacagatggagagagaggcccttctggtcctcctggcagcaaaggaaacagagga
gataagggcgaacaaggtccttcaggaattaaaggagaaaagggagatactcagctggtg
gggggacctccaggagagaaaggagtgaaaggagaaactggggagcgaggacctaaaggt
gcacagggtgaaaagggtgcaaagggacaggaaggaccaccaggagaacagggcctgaga
ggagagccgggagagagaggttccactggcttccggggagcccgtggtcctggtggtcag
aagggagaagcagggcagcctggtgtcccaggagaagcaggaacacctggtaaagatggt
ctgcctggaatgagaggagaaaagggagagtttgggcctgtaggttcgcgaggccttaag
ggagaacgaggcgccaagggagcatgtggacaaagcggagcgaaaggagacaagggggat
gctgggattaatggcagaccgggattgccagggaagaaaggagagcagggtgaagtcggg
tctccaggtcccacaggaagtccagggaaggaaggactcattggagacaagggtgacaga
ggctttgatggagttacggggtcgaagggatcacaaggagagaaaggtgaaaggggccaa
cctggtatccctggtcccactggtccaagaggagcggatggaccccctggtttgacaggc
cctcaaggaccttctggaggtaaaggtccagagggcctgcaaggacaaaagggagaaaga
ggtcctccaggccctgctatggtcggcccacgtggcatccctgggatcccaggagtaaca
ggagaacagggtgagattggccctgatggacctaaaggagacagaggagaaccaggcatg
acggaggatgagattcggacttatgttcgaagtgagatgaacctgcattgtgcttgtgga
ggtaagttgtga
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integrated database retrieval system
