Carassius gibelio (silver crucian carp): 127959591
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Entry
127959591 CDS
T08819
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127959591
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
127959591
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgib04515
]
127959591
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127959591
Cell adhesion molecules [BR:
cgib04515
]
Cadherins
Protocadherins
127959591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
MAP17
UTP20_C
DUF6377
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
127959591
NCBI-ProteinID:
XP_052414814
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All DBs
Position
B6:complement(26159272..26417242)
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AA seq
1238 aa
AA seq
DB search
MDLRDFFLLATLVACFWLDPTIAQELIYPIREELQENVLIGNIPKDLNISHMNAATGATS
NLVYRLVSKAGDTPLLRVMSNTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
LNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKVKVEDGGNPQKSSTAILQVT
VTDVNDNRPVFKESQIEVHIPENSPVGTSVVQLQATDADVGANAEIKYMFGTQVSPATRR
LFALNSTTGLITVQRSLDREETAIHKLTVLASDGSSSPARATITINVTDVNDNAPNIDLR
YIISPTNGTVMLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYIFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELAVMEN
NQRDMFLTTISATDEDSGRNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFLFT
VTARDNGTRALQSQAAVIVTILDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADA
GENAVVRLSILNDNENFILDPDSGVIKSNVSFDREQQSSYTFDVKAVDNGSPPCSSAAKV
TINVIDVNDNPPIVIYPPSNTSFKLVPLSAIPGSVVAEVFALDSDTGMNAELKYTIVSGN
GRGLFRIDPVTGNITLEEKPTVADIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNS
SYINDLIRRTMETPLDRNIGESSETYQNVDNLKTIIAIVTGAMVVIVVIFITVLVRCRNA
SQFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDSAHEPIN
GTISLPAELEEPGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKSKGAPLHTRQGTLPRART
ELNPDYLDLRSRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGPLL
SHPLPLVQAQDEFYEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPSLSSYPSPKSPVTSFNNQKEWAKERLLNGHTLTRSWKSERGSQEQFGDRKTFGS
SDGHFGSGGCGPMADIPLASLKSYQPASGPNSPKEQQL
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggatttaagggattttttcttgttggcaacattagttgcttgtttctggttagatcca
accatagcccaagagctcatttaccctattcgagaagagctacaggagaatgttcttatt
ggaaacataccaaaggacttgaacatctcccatatgaacgctgccaccggtgctaccagt
aatctggtttaccgacttgtgtcaaaagcaggtgacaccccgctacttagagtgatgagc
aacacaggagaaatctttaccacctccaaccgtatcgacagggagaaactctgtcccggc
ccctcttttgaagacagcgagtgctcttttgaaattgaggtggtcattttgcccaatgac
tacttcagattaatcaaaattaaaatcatcgtcaaagacaccaacgataatgcccccatg
tttccctcgcctgtcattaacatttcaattccggaaaacaccctcatcaacagccggttt
gccattccctctgccactgatccagataccggacccaacagcgtacacaaatacgagctg
ttgaacgggcaaagcgccttcggtttggatattgtagagacaccagagggtgagaaatgg
cctcagcttatcgttcagcagaatttagatagagaacagaaagatacttatgtgatgaaa
gtcaaagtggaggatggggggaacccacagaaatccagcactgccattctacaggtgacc
gtcactgatgttaatgataaccggcctgtcttcaaagaaagccaaatcgaggtccacatc
ccagaaaattctcccgtcggcacatctgtagttcagctgcaagccactgatgcagacgtg
ggagccaatgcagaaataaaatacatgtttgggacccaggtgtctccagcgacacggaga
ctttttgctctgaactccaccactgggctcataacagttcaaaggtcgcttgatagagag
gagactgccattcataaactcacagtactagctagcgatggaagctcgagtccagcaaga
gccaccatcactatcaatgtgacagatgtgaatgacaatgctccaaacatcgacttgaga
tatatcatcagtccaactaatggtactgtaatgctttctgaaaaagatccaataaatacc
aagattgcgctcattactgtatctgacaaagacacagatgtcaacggaaaggtgatttgc
ttcattgaaaaagacgttccatttcacctcaaagcagtttatgataaccagtatttgtta
gaaacatctgcactgcttgattatgaaggaaccaaggagtacatcttcaagattgttgct
tctgactctggaaaacctagtctgaatcagactgccctggtcagagtaaggctggaggat
gagaatgacaatccacccattttcacccagcctgtcattgagctggctgtcatggagaac
aaccaacgtgacatgttcctgacaaccatcagcgccacagatgaggacagtggacggaat
gcagagattgtctaccagcttggacccaacgcatcattttttgatcttgaccgcaaaaca
ggagtgctaaccgcatccagggtgtttgatagggaggaacaagagcgattcctctttacg
gtcaccgctagggacaatggcaccagggctctgcagagtcaagctgcagtcatagtaacc
atactggatgagaacgacaatagtcctaaatttacacacaaccactttcagttttttgtg
tcagagaacctgcctaaatatagtactgttggagtaatcacagtcacagatgcagatgct
ggtgagaatgctgtggtgagactttcgatccttaacgataatgagaacttcatccttgac
ccagattctggagtcataaagtccaacgtttcctttgaccgagagcagcaaagctcttac
acctttgatgttaaagctgtggacaacggaagccccccatgttcgtcagctgccaaggtg
accatcaatgtcattgatgtcaacgataatccccccatcgtcatctacccaccatcaaac
acctctttcaagctagtgccactgtctgcgattccaggatcggttgtggccgaggtgttt
gcgttagatagcgatacgggtatgaatgcagaactcaagtacactattgtgagtggtaat
ggaagaggtcttttcagaattgaccctgtaacgggaaacatcacattagaggagaaaccc
acggttgcagacattggcctccataggctagtggtcaacatcagtgacctcggctatcca
aagtccctgcacactcttgtccttgttttcctgtacgtaaatgacactgttggaaattcc
tcatatataaatgacctcatccgtcggacaatggaaacgccactggataggaacatcggc
gagagcagtgagacttatcagaacgttgacaacctcaaaaccatcattgccattgtgact
ggtgccatggtagtgatcgtggtcatcttcataacagttctagttcgctgccgaaatgcc
tcacagttcaaggcggcccagagaaagaagcagggtgctgagtggatgtcccccaatcag
gagaacaagcaaaacaagaagaagaagcgcaaaaagagaaagtcgccaaagagctccctc
ttgaactttgtcaccatcgaggagaacaaacccgacgactctgcccacgaacccataaac
ggaaccatcagtctcccggctgagctcgaggagcccgggattggacgctttgattggaat
gccacccctactaccaccttcaaacccagcagcccagacttggcccggcactacaagtct
gcttcaccccagtcggccttccatctcaaagctgacactccggtatctgtgaaaaagcat
catgtgatacaggagctgccactggacaatacctttgttgggggctgtgacacgctttcc
aaacgttcctccaccagttccgatcacttcagtgcctcagaatgcagttcacagggagga
ttcaagtcaaagggggcacctttgcacaccagacagggaacgcttccccgtgcccgcacc
gaactgaaccccgactatctggaccttcgctcccgagctgagctgaacccagagtattgg
acgccctgcactcctctttcgcagcggcgcgtcacgtttcacctgccggatgggtctcag
gaaagctgcagtgatagtgggctgggggaccatgagcctgtgggcagtgggccactcctc
tcacaccctctccctctggtgcaggcgcaggacgagttctacgagcaggcctctccggac
aagaggaccgaagcggacggcaactcggaccccaactctgatggacctctagggccaaga
ggcttagtggaggccacagagatgtgcactcaagagtgtctggtgttgggccactccgac
aactgttggatgccaccgagtctgagctcgtacccctcgcccaagtcccccgttacctct
ttcaacaaccaaaaggagtgggctaaagagagactgctgaacggccacaccctgacccgc
agctggaagagtgagcgtgggagccaggagcagtttggggacaggaagaccttcgggagc
tcggacggacattttggtagtggcggctgtggtcccatggccgacatcccattggccagc
ctgaaatcctaccagcccgcatccggccccaacagtcctaaagaacagcagctttaa
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integrated database retrieval system