Carassius gibelio (silver crucian carp): 127959719
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Entry
127959719 CDS
T08819
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127959719
09123 Folding, sorting and degradation
03018 RNA degradation
127959719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127959719
03041 Spliceosome [BR:
cgib03041
]
127959719
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127959719
mRNA degradation factors
5'-3' decay
Lsm complex
127959719
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127959719
Complex C
U2 snRNP components
127959719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
127959719
NCBI-ProteinID:
XP_052415007
LinkDB
All DBs
Position
B6:complement(14854296..14855899)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctactcgttcttcaagtccttggtaggcaaagatgttgtggtggagctcaag
aatgacttgagcatttgtggaacactacactcagttgatcagtatctgaacatcaaactg
acagatatcagtgtcactgatccagagaaatatccgcacatgttgtcagtgaagaactgc
tttatccgtggatcagtagtgcgatatgttcagcttcctgcagatgaggtggacacacag
ctgctacaggatgctgcacgcaaagaagctatgcaacagaaacaataa
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