Carassius gibelio (silver crucian carp): 127961662
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Entry
127961662 CDS
T08819
Name
(RefSeq) ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127961662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127961662
03009 Ribosome biogenesis [BR:
cgib03009
]
127961662
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127961662
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 related factors
127961662
Complex B
127961662
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127961662
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
90S particles
Helicases
127961662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Atrophin-1
nSTAND3
AAA_25
Cas3-like_C_2
SRP54
Flavi_DEAD
DUF3915
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
127961662
NCBI-ProteinID:
XP_052416836
LinkDB
All DBs
Position
B7:complement(36635366..36669259)
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AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDERSKDRDRDRDRDRDRDRDRDSKASSASL
SSVAPIAGMLSLKQTAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKERFNDILNRHQ
SFVLVGETGSGKTTQIPQWCVDMVKALPGPKRGVACTQPRRVAAMSVAQRVADEMDIMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPDVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCDFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHEAVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPGYYEMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggcacaggttggatttaggcgatgattattcgtcgagcaagaagaggtca
tctgacggtaaggaccgtgaccgagatcgggacgagcgttcgaaggatcgggaccgagat
cgtgaccgggatcgcgatcgagaccgggatcgagacagcaaggcgtccagcgcgtccctc
agctccgtcgcgcccatcgccggcatgctctcgctcaagcagacggccatgcagcagcag
atcaaccccttcaccaacctgcctcacacgccgcgcttctacgagatcctcaagaagagg
ctgcagctgcccgtctgggagtacaaggaacgctttaacgacatcctcaaccgccatcag
agcttcgtgctcgttggagagaccggctctggaaagaccacacagatccctcagtggtgt
gtggacatggtgaaggccctcccggggcccaagcgcggcgtggcttgtacacagcctcgt
agggtggcagccatgagcgtggctcagagagtggctgatgaaatggacatcatgctgggg
caggaggtcggatactccatcagatttgaggactgtagctctgcgaaaaccatactgaaa
tatatgacagacggtatgttgctccgcgaggctatgaacgacccgctgctggagcgatac
ggtgtcattattctggatgaggctcacgagcgcaccttagccacagatatactgatgggc
gtcctcaaagaagtggttcggcagagatccgaccttaaggtcatcgttatgagcgccact
ctggatgctgggaagttccaggtttatttcgacagctgccccttgctgaccattcctggc
cggacgcatcccgtggagatcttctacacgcccgagccagagagggactacctggaagcg
gccattcgcacggtcatccagatccacatgtgtgaggaagatgagggagatgtgctgctc
ttcctcaccggacaggaggaaatcgatgaagcctgcaaacggatcaaacgtgagattgac
gatctcggccctgatgttggcgacatcaaaatcatcccgctgtactccacgcttccacca
cagcaacagcagaggatcttcgagccgcctccaccccgcaaacccagcggagccatcggc
aggaaggttgtggtttctacaaacattgctgagacgtctctgaccatcgatggcgtggtg
tttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgcattcgagttgag
tcgctgctcgtaacagctattagtaaggcttcggcccagcagagagccggccgtgctgga
cgtacgcgcccaggaaagtgcttccgactctacactgagaaggcctacaagactgagatg
caggacaacacataccctgagatactcaggtcaaatttgggctctgtggtgctacagctc
aagaagcttggtatagatgatctagtgcactttgacttcatggacccaccagctcctgaa
acgctgatgcgagccctggagctgttgaactatctggcggcgctgaatgacgacggtgac
ctgacggagctgggctccatgatggctgagttccctctcgacccccagctcgccaagatg
gtcatcgccagctgcgacttcaactgctccaatgagatcctctccatcaccgcaatgcta
tcagtcccacagtgctttgtgcggcccaccgaagctaagaaggcagccgacgagtccaaa
atgaggttcgcccacatcgacggtgaccacctgaccttgctcaacgtctaccacgccttc
aaacagaaccacgaggcggtgcagtggtgctatgataacttcgttaactaccgctcgctg
atgtcagctgataacgtgcggcagcagctctcacgcatcatggaccgcttcaacctgccg
cgacgcagcacagagttcaccagccgagactattacatcaacatccgccgcgctctcgtc
acaggcttcttcatgcaggttgctcacctggagcgcaccggccactatctcacagtgaag
gacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgagtgggtt
ctctataacgagtttgtgctgaccaccaagaactacatccgcacctgcactgatatcaaa
cccgaatggctggtgaaaatcgctccaggatactacgaaatgagcaacttccctcaatgc
gaggctaagaggcaactggagcgcatcgtcgctaaacttcaaaccaaggagtactctcaa
tactaa
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