Carassius gibelio (silver crucian carp): 127961710
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Entry
127961710 CDS
T08819
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
127961710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgib03036
]
127961710
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
127961710
REST complex
127961710
Heterochromatin formation proteins
Other heterochromatin formation proteins
127961710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
127961710
NCBI-ProteinID:
XP_052416900
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All DBs
Position
B7:complement(24613334..24667208)
Genome browser
AA seq
1298 aa
AA seq
DB search
MKRRLEDQDTVIGSQRQLPGGVDGFQHRVLNSASSLYETAPDNMQPSSSMQYSVSQTYQL
SVAQSSGGHGHTSSSAVHTGPHHHGPAVQPVGQGHAHATPTLTPAPAPTLGQQQFQRLKV
EDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFN
TFLPPGYKIEVQTNDLVNVTTPGQIHHITPHGISVQNLPITQPAQHQTQTAAPTSTAALV
IPSQPTPAKISKPVQSPALTPTSQPNPSIPSYASPRSPSVQSHTPISSSTAGSTPLQNNQ
PVEFNHAINYVNKIKNRFQNQPEVYKSFLEILHTYQKEQRNAKEAGGNYTPTLTEQQVYA
QVAQLFKSQEDLLSEFGQFLPDANSSVVGFEIWPVEICGNNIYIIISVISHLVFLSYPQL
LSKTTAEKAEAVRIDHGVTVKRPQLNNKQRFNQNGCPIRRHPGLPTTPPVKKKQKLGMGK
DHSLAEASKLGIGAESLFFEKVRKALRSSEAYDNFLRCLVIFNQEVISRAELVQLVLPFL
GKFPELFTWFKNFLGYRECAHIESFPKERATEGIAMEIDYASCKRLGSSYRALPKSFQQP
RCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLA
TIRVLEAVQKRLSRMTAEEQAKFRLDNTIGGSSEVIHRKAIQRIYGDKAPDIIDGLKTNP
AVSVPIVLKRLKTKEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVFRSKM
LLNEIETLYDERQEQASEDNAAPPSGPHMTIMYEDSQILEDTAALIIHHVKRQSGIHKED
KYKIKQIIYHFIPDMLFARRGELSDVEEEEEEETEPDEDGTKKHNGTTSTKSKLLFSHTA
ATQQKLSNCDDAYNLFYVNNNWYIFLRLHQILCSRLLRIYTQAEKQIEEDAREREWERNT
LGVKREKNDSPAIQLRLKEPMDIDVEDYYSAFLEMVRNLLDGNMETSQYEDQLREMFTIH
AYIAFTMDKLIQSIVRQLQHIVSDEVCVQVTDLFLSEFANKATGGSLSTQASRGSAESAY
QRKAEQLMSDENCFKLLFQKSKGTVQLAVELLDTEEENSDGPVDTERWPDYVERYLNTSS
ASPELREHLSQKPVFLPRNLRRVRKCQRGQEMQVREAKETAKKSSEGGEDSKMECMFKLN
SYKMVYVFKSEDYMYRRTAQLRAHQSHQRVSTRLHQRFQSWLDRWRKEHVTSDMAAAAYT
WLMGEGLEGLLPCRTVCEPKILHFQNINKYKVTYSTTL
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgcttggaggatcaggacaccgtgatcggctctcagcggcagctccccggg
ggtgtggacggctttcaacaccgcgtccttaactctgcctcctccctctacgagactgca
ccagacaacatgcagccttcgtccagcatgcagtactctgtctcacagacctatcagtta
tcagtggcccagagttctggtggacatggacataccagcagttcagctgtgcacactggg
cctcatcaccatgggccagctgtccagcctgtgggccagggtcatgctcatgctacccct
acccttacccctgcccctgccccaacactgggtcagcagcagtttcaaaggctcaaggtt
gaagatgctctttcctatttggatcaagttaaacttcagtttggcaatcagccgcaggtc
tacaatgacttcctggatatcatgaaggagttcaagtctcaaagcattgatacaccaggt
gtgatcagcagagtctcccagctcttcaagggccatccagacctcatcatgggcttcaac
accttcctgcctcctggctacaagattgaggttcagaccaatgatctggttaatgtgacc
actcccggccagatccaccacatcaccccacatggtatctctgttcaaaaccttcccata
acccagccagcgcagcaccagactcaaacagcagctcccaccagcactgcagccttggtc
atccctagccagccaacccctgccaagatcagcaagccagtgcagtctcctgcacttacc
ccaacgagccagcctaatccgtccattccctcatacgcctccccgcgctcgccttcggtc
cagtcccacactcccatcagcagcagcactgccggttcaaccccgctgcagaacaaccag
cctgtggagttcaaccacgctatcaactacgtgaacaaaatcaagaaccgctttcagaac
cagccagaggtctacaaatccttcttggaaattctgcacacataccagaaggagcagcga
aatgctaaggaggcagggggaaactacacacccactctcacagagcagcaggtctatgct
caggtggcccagcttttcaagagccaagaggaccttctttcagaattcggccagttcctg
ccagatgctaacagttcagtggtaggttttgagatctggcctgttgagatctgtggtaat
aatatctatattattatatctgtaatatctcacttggtgtttctctcttatcctcagtta
ttgagtaagactacagctgagaaggctgaagctgtgcgtattgatcatggggtgaccgta
aagagacctcaactgaacaataagcagaggtttaatcagaatggatgtccaattcgtaga
catccagggctgcccactacgccccctgttaagaaaaagcaaaaattgggaatgggaaaa
gaccattcgctggctgaagccagtaaacttggaattggtgctgaatctctcttttttgaa
aaggtgcggaaagctctgcggagttcagaggcttacgacaatttcttgcgctgtttggtc
atcttcaatcaagaagtgatctcacgggctgaacttgtgcagctggtcttaccatttttg
gggaaatttcctgagctttttacatggttcaagaacttccttggctacagagagtgtgcc
catattgagagctttcccaaagagcgagccactgaaggcattgcaatggaaattgattat
gcatcctgcaaaagattgggctccagttacagagcccttcccaaaagcttccagcagcct
cgatgtacaggcaggactccattgtgcaaagaggtgttgaatgatacatgggtgtcattt
ccatcctggtctgaggactcaacctttgtcagctccaaaaagacccagtacgaagagcat
atatatagatgtgaagatgagcgatttgagcttgatgtggttctggagacaaacctcgcc
accatccgtgttctggaggctgttcaaaagaggctctcgcgcatgacggctgaggaacag
gccaagttccggctggacaacaccatcggaggctcctctgaggtcatccatcgtaaagct
attcagaggatatatggtgataaagctccagacatcatagatgggcttaagacgaaccct
gctgtctctgtacctattgtactcaaaaggctgaaaactaaagaagaagagtggcgagag
gcacagcgtggcttcaataagatctggagggaacagaatgagaagtattacctgaagtct
ttagatcaccaaggtattaacttcaaacagaacgacacaaaggtgtttcgctccaaaatg
ctgctcaatgaaatcgagactctttatgatgagcggcaagagcaggcttcagaagacaat
gccgcccctccgtcaggtcctcacatgaccatcatgtacgaggacagccagatcctggaa
gacacggctgctctcatcatccaccatgtgaagaggcagtccggcatccacaaagaggac
aagtataaaatcaaacagatcatataccatttcattcccgacatgctgttcgcccgacgc
ggcgagctttctgatgtggaggaggaggaagaagaggagaccgaaccagatgaagacggg
actaaaaagcacaatgggacgacgtcaacgaagtctaagctcctcttcagccatacagca
gctacccagcagaagctgagtaattgtgacgatgcctacaacctcttctatgtcaacaat
aactggtacatctttctgcggctgcaccagatcctgtgctcccgactgctacggatctac
acgcaggcggaaaaacagatagaggaagatgccagagagagagagtgggaaagaaacacg
ttgggagtgaaaagagagaagaacgacagcccggccatccagctgcgtttgaaggaaccc
atggacatcgatgttgaagactactactccgccttcttagagatggtgcgaaacctcctg
gatggcaacatggagacatctcagtacgaggaccagctgagggaaatgtttaccatccat
gcctacattgccttcaccatggacaaactcatccagagtatagtgagacagctccagcat
atagtaagcgatgaggtctgtgtacaggtgactgatcttttccttagcgagtttgccaac
aaagccaccggtgggtccctgtccacccaagcttctagaggaagtgccgaatcagcctac
cagcgcaaagctgagcagctgatgtccgacgagaactgttttaagttattgttccagaag
tctaaagggactgtgcagctggccgtagagcttttggacacagaggaggagaactcggat
ggacctgtggatactgagcgctggcccgactacgtggagcgatatctgaacaccagctcg
gcatctccagagctgcgagagcatctctcccagaagcctgtgtttctacccaggaacctg
aggcgagtgcggaagtgccagagaggtcaggagatgcaggtgagagaggccaaagaaaca
gccaagaaatcctccgagggcggcgaggactcaaaaatggagtgcatgtttaagctcaac
tcctacaagatggtgtacgtcttcaagtcggaggactacatgtacagacgcactgcacag
ctgagagcgcatcagtcacatcagagagtaagcactcgtctgcatcagcgctttcagtcg
tggctagacaggtggcggaaagagcatgtgaccagtgacatggcggccgccgcttacacg
tggctgatgggcgagggcctggaggggctactgccctgcagaaccgtctgtgaacccaag
atcctccacttccagaacatcaacaaatacaaagtcacctacagcactacgttgtaa
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