Carassius gibelio (silver crucian carp): 127962727
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Entry
127962727 CDS
T08819
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127962727
Transcription factors [BR:
cgib03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127962727
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
127962727
NCBI-ProteinID:
XP_052418350
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All DBs
Position
B7:12481795..12585446
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AA seq
817 aa
AA seq
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MPSSSEVVCEEQRRTGAAKQAEGDSIRIMSSKQATSPFASTPDGGEDGMNQERMSWEKEE
NSESLVNPQLPLHNLLHNKPPLEELQPISSSVPPESDWDSLMSAQQRMESDSNKVCSLYS
FRNNSTSPHKPEEGARERGDLLSSSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDES
SCMEKLLSKEWKEKMERLNTGELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHD
EQKKLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMI
PIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLY
AAQLASMQVSPGAKMPPLPQPPNSTGPISPSGLKNEKRASTPLAQVKEEGTQPLNLSARP
KTAEPVRSPTSPTQSLFPGNKSSPNSLSKSRGIPSPIGGMGRGSSLDILSSLNSTALFGD
QDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALTSMGLNNCRADKERSHYDNLGHH
LGKLGEDGKIGHRVIDLTRPEDFEGCKELNGSADKPHQYYCWPTGGASTAEARVYREPRG
RNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEE
QARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQT
QIPITTSAGVVYPGAITMATTTPSPHMTSDCSSASASPEPTIPVIQSTFNMKMEPGTMVS
NDPVNGEDEMDMYEDFEDEPKSDYSSENDTHEPVSAN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagctctgaagtggtgtgtgaagaacagagaaggacaggagcggccaaacag
gctgagggggacagtatcagaatcatgtcttccaagcaagccacctctccgttcgcctcg
acccctgacggaggcgaggatggaatgaatcaggagcgcatgtcctgggagaaagaggag
aactcagagtcactagttaaccctcagctgcccctgcacaatctgctccacaacaaacct
cccctggaggagctccagccaatcagcagcagtgtgccgcccgagtccgactgggacagc
ctgatgtcagcccagcagcgcatggaatcggacagcaataaagtatgttccttatactcc
ttccggaataactctacctctccacacaagccagaggagggggccagggagcgtggcgac
ctgctgagcagttcagccttcggaacgccagagcgccgcaaaggaagcctggccgatgtg
gtggacacactgaaacagaagaagctagaggagatgacaaagacagagcaagacgaatcc
tcctgcatggagaaactcctttctaaagaatggaaagagaagatggagcgactcaacaca
ggcgagctgttaggagaaattaaaggtactccagaaagtctcgcagagaaggagcgacag
ctctccaccatgatcacacaactcatcagcctgcgagagcaactcctggccgcccatgat
gagcagaagaaactggccgcctcacagatggagaaacagcgtcagcaaatggaactggca
cgccaacagcaagagcagattgccagacaacagcagcaacttctgcagcaacagcacaaa
atcaatctcctccagcagcagatccagcaggtccagggtcacatgcctccgctcatgatc
cccatttttccacacgaccagcgcactctggcagcagccgcggcagcccagcagggcttc
ctcttccccccaggcatgtcctataagccaggtgataactacccggtgcagttcattcca
tccacaatggcagctgctgccgcgtcaggactcaaccctctccagctccagcaactctac
gccgcccagctggccagcatgcaggtctctcctggagccaagatgcctccgctgccccaa
ccccccaattctactgggccgatctccccgtctggcttgaagaatgaaaagagggcctca
accccactggctcaagtcaaggaggagggaacgcagcctctcaacctctccgcccggccc
aagacagctgagcccgtcagatcccccacatccccgacacagagcctcttcccaggcaac
aagagcagcccgaacagcctgtccaagagcagaggcatccccagccccatcggaggaatg
ggccgtggctcgtctcttgacattctgtccagcctgaactcaacagcgctgtttggagat
caggatgcagtgatgaaggccatccaggaggcgaggaagatgagggagcagattcagaga
gagcagcttcagcaccatcagcagggaatggaggccaagctgtctgccctcaccagcatg
ggcctgaacaactgcagggctgataaggagaggtctcattatgataacctgggccatcac
ctgggcaaactaggcgaggatgggaagattggtcacagagtcatcgatctcaccaggcca
gaggatttcgaggggtgtaaggaactgaatggctctgcagataaaccacatcagtattat
tgttggccaacaggaggcgccagcactgccgaggcacgggtctacagggaaccccgggga
aggaacagcaacgaacctcacatcaaacggcccatgaacgccttcatggtctgggccaaa
gatgagcgccgcaaaatccttcaggccttcccagacatgcacaactccaacatcagcaaa
atcttgggatctcgctggaagtccatgacgaaccaggagaaacaaccgtattatgaggag
caggcacggctcagcaagatccacctggagaagtatcccaactacaagtacaagccccgg
cccaagcgcacctgcatcatcgacggcaagaagctgcgcataggcgagtacaagcagatg
atgaggtcaaggaggcaggagatgaggcagttcttcactgtggggcagcagccacagacg
cagatccccatcaccaccagcgcaggtgtcgtataccccggtgccataacaatggcgacc
actacgccctcccctcacatgacgtcagactgctccagtgcctcagccagccccgagccc
accatccccgtcatccagagcaccttcaacatgaagatggaaccgggcaccatggtgtct
aacgaccccgtgaacggagaggacgagatggacatgtacgaggactttgaggacgagccc
aaatcggactacagcagtgagaatgacacacacgagccggtcagtgccaactga
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