Carassius gibelio (silver crucian carp): 127963565
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Entry
127963565 CDS
T08819
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127963565
04518 Integrin signaling
127963565
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127963565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127963565
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127963565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
127963565
NCBI-ProteinID:
XP_052419498
LinkDB
All DBs
Position
B8:11554313..11574241
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGSCIQDGEKYADRAVWKPEACRVCV
CDTGAVLCDEVICEDLRDCTNPIIPPGECCPICPVDTDEPNGSPGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGELGPKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPHGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPPGPPGKPGSDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGTNGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGQRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVT
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGPTGLRGLPGKDGETGASGPPGPAGPAGERGEQ
GQPGPPGFQGLPGPTGASGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGIQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGVVGIPGSKGDRGDSGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGAKGETGPIGPIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSHGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPPGPPGASGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEK
GEPGEDGPPGADGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGAPGDQGAAGPAGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLAQTEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTPSTTTIQLN
FLRLLSTEATQTITYHCKNSIAYMDQATGNLKKAVLLQGSNDAEIRAEGNSRFTYGVLED
GCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPIDVGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctactcgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactttggcagctgcatccaa
gatggcgagaagtatgcagaccgtgcagtatggaagccagaagcatgccgtgtgtgtgtg
tgcgatacaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtacc
aatcccatcattccacctggagagtgctgtcccatctgcccagttgacaccgacgaacct
aacgggtcacctggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggaccaatgggacctccaggagagcagggaccacgtggcgag
ttaggacctaagggtgagaagggaaatcctggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctcatggtccccctggacttgga
ggaaactttgctgctcagatggctggaggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggccccactgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacccggccctgct
ggtcctcttggacctcgtggccctcctggaccccctggaaaacccggaagtgatggtgag
gctggcaaacctggcaagtctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccccggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggtactaatggtgag
agtggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctgga
ccttctggtgctgctggtgcccgcggtaatgatggtctgcctggtcctgctggtccacct
ggacctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcccaaggacaacgtggagaggccggt
acacctggatcacctggacccgccggagcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgcttctggcatcgctggtgcccctggtttcccaggaccc
cgtggcccacctggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaagggcgaggcaggacccaagggagagcgtggtgttaca
ggacctcagggtgcacctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccgggcctctcggacctcctggagaaagaggagctccgggtaaccgtgga
ttccctggtcaggatggtctagcaggagctaagggcgcacctggtgatcgtggtgttcct
ggtttgaccggcccgaaaggaggaactggagatcctggtcgcacaggcgagcctggtctt
cctggagccagaggtctcactgggcgccctggtgatgctggacctcaaggaaaagttgga
ccatctggtgcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttgggcccactggtcttagaggtttgcctggtaaagatgga
gagactggagcttctggtccacctggccctgctggtccagctggtgagagaggagagcag
ggtcagcctggtccacctggcttccagggtcttccgggacctactggagcctctggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggcgctggccctcagggtatccag
ggaccaagaggacttccaggaactcctggtactgatggacctaagggtgcaattggacca
gctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagagagga
gttgttggaatccctggatctaaaggtgacagaggtgacagtggagagaaaggacctgaa
ggtgctcctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggtccaattggtgctcctggt
gctcgtggtgcccctggcgatcgcggtgagattggtgcacccggacctgctggctttgct
ggacctcctggtgctgatggccagcctggaattaaaggagagcagggcgagtcaggacag
aaaggtgaagctggatctcatggaccccaaggaccatcaggagcacccggcccagtgggt
ccaactggtgttacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggagctgcaggaagagttggatcacctggccccaatggtaaccctggtcct
cctggccctccaggtgcctctggtaaagatggtcctaagggagttcgtggtgatgccggt
cccccaggcagagcaggagatgctggactgcgtggtcctcctggtgctcctggagagaag
ggagagcctggagaggatggccctcctggtgctgatggtccctccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggcttcccagga
cttccaggaccctctggtgagcctggcaaacagggagctcctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccaatcggtgctcctggagctcctggtgcacctggtgctcct
ggttccgttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggacctgctggagctagaggaatggtgggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcacc
ggtctgcagggtcttcctggacctcctggtgctcctggagaccagggtgctgctggacct
gctggaccaagtggcgctaagggaccttcaggacctgttggaccagctggtaaggatggt
tctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagagtct
ggcccaagtggtccacctggtaatcctggaccccctggccctcctggtcctcctggccct
ggcattgacatgtctgccttcgctgggttggcacagaccgagaagggacctgatcctctg
cgttacatgcgtgctgatgaggcctccagctctcttagacaacatgatgtggaggtggac
gccacgctgaaatcaatcaacagccagatcgaggacatccgcagcccagatggctcccgc
aagaaccctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcctaaccttggtagcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaaaaactgg
tggagcagcaagagcaaggcgcagaagcatgtgtggtttggagagagcatgaacggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccaccatccagctgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
attgcttacatggaccaagccacaggcaacctgaagaaggccgttctgctgcagggctcc
aatgatgcggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtggggcaagactgtgattgagtacaaaactcagaag
acatccaggctgcccattgtggacattgctcccatagacgtcggaggagcagatcaggag
tttggagtggacgttggtgcagtctgcttcttgtaa
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integrated database retrieval system
