KEGG   Carassius gibelio (silver crucian carp): 127964490
Entry
127964490         CDS       T08819                                 
Name
(RefSeq) exosome complex component RRP45
  KO
K03678  exosome complex component RRP45
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127964490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgib03019]
    127964490
Messenger RNA biogenesis [BR:cgib03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     127964490
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 127964490
NCBI-ProteinID: XP_052420697
LinkDB
Position
A1:complement(4792476..4797074)
AA seq 395 aa
MRDTPLSNCERLFLLKAIEQKKRLDGRETYDYRNIKISFGSDYGCCSVELGKTRVLCQVS
CELVPPKDSRPTEGIMFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFSPEER
DPIPLSIYHMPICVSFAFFLQGSYLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDRKIRKEGGKFGFAESMPKERITTLKRDE
VPVEMTDVKETANDIVNSTETTTEAVPSPVLVGMGTAQIGEGIVNSWALEEDEEDESQTE
DRKTDEVMLISDSEEEEVVILHEEAQKSTNTSGEK
NT seq 1188 nt   +upstreamnt  +downstreamnt
atgagggatactccgctgtcaaactgcgagaggctttttcttctaaaagctatagagcag
aaaaaacgcttagacgggagagagacatacgattaccggaatattaaaatctcttttgga
tctgattatggctgctgtagcgtggaacttggaaaaacaagggtgttgtgtcaggtatct
tgtgagttggtgcctccaaaagattcacgtcccacagaaggcatcatgttttttaatttg
gaattgtctcccatggcatcaccagcctttgagccaaacagacagtcagagttgttggtg
acgttaaacagacagctggagagatgtctgaggaactccaaatgcatagacacagagtct
ctctgtgtagtttcaggagaaaaggtttggcagatacgggttgatgtccatgtgttaaat
catgatggaaacttgatggatgcagccagcattgctgctatatctgcactctcacatttt
aggcggccagatgttgctattcagggacgagatgtcactgtgttcagtccagaggagaga
gatcctattccactgagcatttatcacatgcctatatgtgtcagctttgctttcttcctg
cagggctcttatttgcttgtggacccttgtgaacgagaagagcgagtgaaggatggattg
ttggtgatagccatgaacaaacatcgagagatctgctccattcagtctagtggaggaatc
atgcttctcaaagaccaggttttaagatgcagtaaaatagcaagtgtaaaagtttctgaa
attacagagctcatcaacaaggccttagagaatgacagaaaaatcagaaaggagggtgga
aagtttggctttgctgagtccatgcccaaagagcgaatcacaaccctcaagagagatgaa
gtcccggtggagatgacagatgtcaaagagactgccaatgacattgtgaacagcacagaa
actaccacagaagctgttccttctcctgttcttgttggcatgggaactgcacagataggt
gaaggcatcgtgaactcatgggcactggaagaggatgaagaggatgaatctcagacagag
gacagaaaaacagatgaagtgatgttaatctcagacagcgaagaggaggaagttgtcatt
cttcatgaagaagctcagaaatccacaaatacttctggagaaaaatga

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