Carassius gibelio (silver crucian carp): 127964490
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Entry
127964490 CDS
T08819
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127964490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127964490
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127964490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
127964490
NCBI-ProteinID:
XP_052420697
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Position
A1:complement(4792476..4797074)
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AA seq
395 aa
AA seq
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MRDTPLSNCERLFLLKAIEQKKRLDGRETYDYRNIKISFGSDYGCCSVELGKTRVLCQVS
CELVPPKDSRPTEGIMFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFSPEER
DPIPLSIYHMPICVSFAFFLQGSYLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDRKIRKEGGKFGFAESMPKERITTLKRDE
VPVEMTDVKETANDIVNSTETTTEAVPSPVLVGMGTAQIGEGIVNSWALEEDEEDESQTE
DRKTDEVMLISDSEEEEVVILHEEAQKSTNTSGEK
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagggatactccgctgtcaaactgcgagaggctttttcttctaaaagctatagagcag
aaaaaacgcttagacgggagagagacatacgattaccggaatattaaaatctcttttgga
tctgattatggctgctgtagcgtggaacttggaaaaacaagggtgttgtgtcaggtatct
tgtgagttggtgcctccaaaagattcacgtcccacagaaggcatcatgttttttaatttg
gaattgtctcccatggcatcaccagcctttgagccaaacagacagtcagagttgttggtg
acgttaaacagacagctggagagatgtctgaggaactccaaatgcatagacacagagtct
ctctgtgtagtttcaggagaaaaggtttggcagatacgggttgatgtccatgtgttaaat
catgatggaaacttgatggatgcagccagcattgctgctatatctgcactctcacatttt
aggcggccagatgttgctattcagggacgagatgtcactgtgttcagtccagaggagaga
gatcctattccactgagcatttatcacatgcctatatgtgtcagctttgctttcttcctg
cagggctcttatttgcttgtggacccttgtgaacgagaagagcgagtgaaggatggattg
ttggtgatagccatgaacaaacatcgagagatctgctccattcagtctagtggaggaatc
atgcttctcaaagaccaggttttaagatgcagtaaaatagcaagtgtaaaagtttctgaa
attacagagctcatcaacaaggccttagagaatgacagaaaaatcagaaaggagggtgga
aagtttggctttgctgagtccatgcccaaagagcgaatcacaaccctcaagagagatgaa
gtcccggtggagatgacagatgtcaaagagactgccaatgacattgtgaacagcacagaa
actaccacagaagctgttccttctcctgttcttgttggcatgggaactgcacagataggt
gaaggcatcgtgaactcatgggcactggaagaggatgaagaggatgaatctcagacagag
gacagaaaaacagatgaagtgatgttaatctcagacagcgaagaggaggaagttgtcatt
cttcatgaagaagctcagaaatccacaaatacttctggagaaaaatga
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