Carassius gibelio (silver crucian carp): 127964507
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Entry
127964507 CDS
T08819
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127964507
Transcription factors [BR:
cgib03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127964507
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127964507
NCBI-ProteinID:
XP_052420687
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All DBs
Position
B9:complement(17250484..17255401)
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AA seq
335 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGGSAGGYAHMNGWANGAYSGQVAAAAAA
AAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMSALQYSPISNSQSYMSASPS
GYGGISYTQHQNSSVASSAAIGTLSSLVKSEPNISPPVSTHSRGPCTGDLREMISMYLPT
GESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggaccttcattccccgggaccacaaaccaacacgaat
ccggggcaaacgggtccaaactcggggagcaaagccaaccaagaccgcgtaaagagaccc
atgaacgcttttatggtctggtcccggggccagcggcgaaaaatggctcaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggtgctgagtggaaggtgatgtcagag
gctgaaaagcggccctttattgatgaagcgaagcggttgcgcgccatgcacatgaaggag
catccggattacaaatacagaccgaggcgcaaaaccaagaccctgcttaaaaaggacaaa
tactcgttggctggcggcttgctcggcggcgcgggaggcggagtcgggatgagtcctgca
ggggtcggccagaggttggagagtcctgggggtcacggaggctcggccggtggctacgct
cacatgaacggctgggcaaacggcgcttactccggccaggtggccgccgcggcagcagcg
gctgcgatgatgcaggaggcgcagctcgcttacagccagcacccaggcagtgggtctcac
catcaccacgctcatcaccatcacccgcacaaccctcagcccatgcaccgctacgatatg
agtgccctccagtacagccccatctcgaactcccagagctacatgagcgcttctccatcc
ggctatggtgggatatcatacacgcagcatcaaaactccagcgtcgcttcttctgccgcc
atcggtacgctgagctcgctcgtcaagtccgaacccaatataagccctccggtcagcaca
cactcccgaggcccctgcaccggagacttgagagaaatgattagcatgtatttaccaacc
ggcgagtccggagatccgtctgtgcagagcagactgcatgccttaccgcagcactatcag
agcacaactgccggagtaaacggaactgtcccactgacgcatatttga
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