Carassius gibelio (silver crucian carp): 127965159
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Entry
127965159 CDS
T08819
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127965159
03015 mRNA surveillance pathway
127965159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127965159
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127965159
mRNA cycle factors
P-body specific factors
127965159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
127965159
NCBI-ProteinID:
XP_052421722
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All DBs
Position
B9:complement(20349300..20361530)
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AA seq
514 aa
AA seq
DB search
MTRINTNMQASRYLGEFPREFTDFRQRRGRNGDMRSEKEQRTGSRERGSVEIQFRECQRE
QDNVAVNPKHKEEKKEIFTKVVIRRLPPSLSKDQLEEHLSPLPSFDYFEFFPADQSLYPH
LFSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQEFPAVVEFAPFQKVSKKKLKKKDAKAG
TIEEDPEYRRFLENYSCDEEKSMANPETLLGEIEAKTRELIAKRTTPLLEYIKNKKLEKQ
RIREEKREERRRRELEKKRQREEEKRKRREEERRKRKEAEKQKKLSEKEIKIKLLKKCDG
DDDVDSDRLKDKGDSGEKEKNRWEKPAGHTKSKESKDNRSQIESDKEQREGHGRRQRDKE
HRGRDEERKRQRHHYEFDKFMRRKEETKWGKGYCQDRAKKEQHHGYSYCPETGDKLGKED
REDMGSRKERIRNKSVLVHQEKRTSQSEGPDQIGGALPAKDRPAMQLYQPGARNHKRMGS
GNKMFDFPPISPEHGGEHCYKKVIGTGSEKSADE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgacgagaataaacactaacatgcaagcctcgcggtatttgggtgaattcccgcgagag
tttacggatttcagacagcgaagagggcgaaatggagatatgaggtctgaaaaggagcag
aggacaggaagcagggagagaggcagcgtggagatccagttcagggagtgtcagagggag
caggacaacgtcgcggtgaacccgaagcacaaggaggagaaaaaggagatcttcaccaag
gttgtcatacgccgactgccacccagtctatcaaaagaccagctcgaggagcatctgagt
ccgcttccatcttttgactattttgagttcttccctgctgatcagagcttatacccacat
ctcttctcaagagcctacatcaacttcaaaaacccagaggatatcattattttcagagat
cgctttgatggctatgtattcattgacaataaaggccaagagtttccagctgttgtagaa
tttgctccatttcagaaggtttccaagaaaaagttaaagaagaaagatgctaaagcagga
actattgaagaagacccagaatacaggcgatttctggaaaattactcctgtgatgaggag
aaatcaatggcaaatccagaaacactgctgggcgagattgaagctaaaacccgagaactc
atagccaaaaggacaacacctttgctggaatacatcaaaaacaagaaattagagaaacag
agaataagagaggaaaaaagagaggagaggcgaaggagagaactggaaaagaagcgacag
agggaggaggagaagcgtaaacgcagagaagaggagagacgaaagcgaaaggaggctgaa
aaacaaaagaagctctctgagaaggagataaagatcaagcttttgaagaaatgtgatgga
gacgatgacgtggactcagatagactgaaagataaaggagacagcggagagaaggagaag
aacagatgggaaaagccagcaggacacactaagtcaaaggaatccaaggataataggagt
caaatcgagagtgacaaggagcagcgggaaggtcatggccgtcgccaaagggacaaagag
catcgtggcagagacgaggagcgcaaacgacagaggcatcactacgagtttgacaaattc
atgcgacgcaaggaggagaccaaatggggtaaaggctactgccaggacagagccaagaaa
gaacaacatcatggctattcttactgcccagagactggagacaaactgggcaaggaggat
cgagaggacatgggcagcaggaaagaacggattcgcaataagtctgtgttagtgcatcag
gagaaaaggacttcccagtctgaggggccagaccagataggaggggctctgccagcaaag
gaccgaccggcaatgcagctgtaccaacctggtgctagaaaccacaagcgaatgggctct
gggaacaagatgtttgacttcccaccgatctctcctgaacatggaggagaacactgctac
aagaaggtcattggtacaggctccgagaagagtgcagacgagtga
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