Carassius gibelio (silver crucian carp): 127966666
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Entry
127966666 CDS
T08819
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127966666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127966666
03041 Spliceosome [BR:
cgib03041
]
127966666
03009 Ribosome biogenesis [BR:
cgib03009
]
127966666
03016 Transfer RNA biogenesis [BR:
cgib03016
]
127966666
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127966666
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127966666
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127966666
Complex C
U4/U6.U5 tri-SnRNP related factors
127966666
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
Pre-60S particles
Helicases
127966666
Transfer RNA biogenesis [BR:
cgib03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127966666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127966666
NCBI-ProteinID:
XP_052423783
LinkDB
All DBs
Position
B10:complement(9181182..9208378)
Genome browser
AA seq
1053 aa
AA seq
DB search
MSFPARGQRNVLWVSAGVMADAFGDDLFSVFDEEQAGSSKKATPKSTAQAGKTPDKGGKQ
KREPAAVCKRDADDDGPEEMVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEV
VLPADEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYA
IALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRS
MLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAE
WICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAG
DTGGSAGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKL
DFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEI
LFSEGLIKALFATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGM
DERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSF
YQFQHYRAVPGVVEKMKKLEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRY
CLPFLQPGRLVRVKKEDLDFGWGIVVNFQKKANVKAAVGDAEPLFVVEVLLHCSKDSLKN
AATEAAKPVGPGEKGEMQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKR
FPDGVPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIA
GDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLT
EMVFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEA
KLDVNEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQ
AAKAIGNTELENKFATGITKIKRDIVFAASLYL
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttccggcacgcggccagcgcaacgtattgtgggtatcggctggagtcatggcg
gacgcctttggagacgatttgttcagcgtgttcgatgaagaacaggccggttccagcaaa
aaagccactccaaagtccacagctcaggcaggaaagactcctgataaaggtggtaaacag
aaacgcgaaccagcagctgtgtgtaaaagagatgctgacgatgacggaccagaagagatg
gtgctcgggaaaagacagaagctggaaacggtgtcagctgaggagatcaatctgtcagag
ctcatgcctaaagtgaaggcggagcaggtggagaccgtggagggctgcactcatgaggtg
gttcttcctgcagacgaggaatacactccactgaaaccacgcgttggaaaagcagctaag
gagtaccccttcatactcgaccctttccagcgcgaggccatcctctgcatcgataacaac
cagtctgtgcttgtgtcggcccacacatccgcaggaaagaccgtgtgtgcggagtatgcc
atcgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatcaaagctctg
agcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatgaccggt
gacgtcaccattaaccccacggcttcctgcctggtcatgaccaccgagattttgaggagc
atgctgtacagagggtcagaggttatgagggaggtggcgtgggtcatctttgatgagatc
cattacatgagagactcagagcgtggcgtggtctgggaggaaaccatcatcctgctgcca
gacaacgtgcatcatgtcttcctgtccgccaccattcccaacgctcgacagtttgccgag
tggatttgtcaccttcacaaacagccctgccacgtggtgtacacagactaccgccccact
ccactgcagcactacgtgtttccagcaggaggagacggactccacctggttgtggatgag
aacggagagttcagagaagacaattttaacaccgcaatgcaggtcctgagggatgcgggg
gacacgggaggcagcgctgggggcaaatgggaccccaaaggcagaaaggggggaaccaaa
ggtccatccaatgtctttaagattgtgaagatgatcatggaaaggaacttccagccggtg
attatctttagcttcagtaagaaggaatgtgaggcctacgcactgcaggtggctaaactg
gatttcaacacagacgatgagaagaaactggtggaagaagtgttcaacaacgccacagac
tgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccgttgctgaag
agaggaattggtattcatcatggcggcctgctcccgatcctgaaagagaccattgagatc
ctgttctctgagggactgataaaggccttgtttgctacagaaacgtttgccatgggaatc
aacatgcctgcaagaaccgtgctcttcaccagcgcgcgcaaatttgacggcaaagacttc
cgctggatcacctctggagagtatatccagatgtcaggacgtgctggcagaagaggaatg
gacgagaggggaatagtcattttcatggtggatgagaagatgagccctgccgtgggcaaa
cagttactgaagggttctgcggatcctctgaacagtgcgttccacctgacctacaacatg
gtgctgaatctgctgcgtgtggaggagatcaacccagagtacatgctggagaaatccttc
taccagttccagcactacagagccgtgcctggggttgtggagaagatgaaaaagctggag
gaggagtataatgcaatacgaatccctaatgaagagagcgtggtgacctactacaagatc
cgtcagcagctggccaaactgggcaaagaaattgaggagtttattcacaaacctagatac
tgcctgcccttcctgcagccgggcagactggtcagggtgaaaaaagaagatctggatttc
ggttggggtatagtcgtcaatttccaaaagaaggcaaacgtcaaggctgcggttggggat
gctgagccgttatttgtggtggaggttctgctccactgcagcaaagacagcttgaagaac
gcagccacggaggcagccaaaccagtaggcccaggagaaaagggcgagatgcaggttgtt
cctgtgattcttcatctcatcacctccattagttcggtgcgcctctacattcctaaagac
ctgcggccgtatgacaaccgacagagcatgctcaaatccatacaggaggtgcagaaacgt
ttcccagatggcgttcctctgctagatcccatagacgacatgggcatcaaggatccagcg
ctgaagaaggtcattcagaaggtggaggcgtttgagcacaggatgtacacgcaccccctg
cacagcgaccccaacctggaggccgtttacactctgtgtgagaagaaagctctgattgca
ggcgacattaaagcggcgaagcgtgagctaaagaaagcacgcaccgtgctgcagatggac
gagctgaagtgcaggaagcgtgtgctgcggcgcctgggattcgccacttcctctgatgtc
atcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagacgagctgctgctgaca
gagatggtgtttaacgggctgttcaacgacctgacggcggagcaggccaccgcgctcctc
agctgctttgtcttccaggaaaacgctaacgagatgcccaaactgacggagcagctggcc
ggaccgcttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgcggaggcc
aagctggacgtgaatgaggacacttacctgaaccagttccgcccgcacctgatggatgtg
gtctacacctgggccaacggctcctccttctctcagatatgcaaaatgacagacgtgttt
gaaggcagtattatccgctgcatgcgcagattggaggagctcttgaggcagatgtgccag
gcagccaaggccattggaaacacagagctggagaataagtttgccacgggtataacgaag
attaagagggatatcgtgtttgctgccagtctttacctgtga
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