Carassius gibelio (silver crucian carp): 127967797
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Entry
127967797 CDS
T08819
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127967797
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127967797
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127967797
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127967797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
127967797
NCBI-ProteinID:
XP_052424445
LinkDB
All DBs
Position
B11:6035094..6083051
Genome browser
AA seq
1491 aa
AA seq
DB search
MILSADSRTLLLFVATLGAFLALVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGVVLCDEIICEELKDCPKPEIPFGECCPVCAADQPPSTDRLPGAKGQKGEPGDITDVT
GPRGPAGPMGPPGEQGPRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNLAAQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGQNGAPGPQGFQGNPGEAGEPGSS
GPIGPRGPPGPSGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGESGATGAKGEAGSPGESGAPGPMGPRGLPGERGRPGPSGATGARGNDGSPGAAGPP
GPVGTAGSPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSPGPSGISGNPGTDGLP
GAKGSGGAPGIAGASGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEIGNA
GPQGAPGPAGEEGKRGPRGEPGALGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGAA
GVSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKAGPSGAAGEDGRPGPPGPQGVR
GQPGVMGFPGPKGGSGEAGKSGDKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQ
GPRGLPGTPGTDGPKGGVGPGGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGDKGPE
GAPGKDGARGLTGPIGPTGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGPAGFA
GPPGADGQPGLKGDQGEGGQKGDAGAPGPQGSSGAPGPQGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGAAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEK
GDPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPTGAPGAPGGTGAP
GPVGPTGKQGDRGEAGPKGPAGSLGPAGARGMPGPQGPRGDKGEAGDSGERGQKGHRGFT
GLQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGLPGPPGPGIDLSAFAGLSHPEKGPESLQYMRADQAAEGNVQNDAEVD
ASLKSLNNQMENIRSPDGSKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAMKVFCN
METGETCVYPKPANIPRKSWWTSKGSERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDESTGDLKRALLLQGSNDVQIRAEGNSRFTYTVLED
GCKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDLGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattccaggactctactgctctttgtggcaactctaggcgcattt
ctggcccttgttaaatgccaagaggaggatgaccaagatccaggcagctgtactcaggat
ggccagttctacagggacaaggacgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacaccggcgtggtgctgtgtgacgagatcatctgcgaggagctgaaagactgtcccaaa
cctgagatcccatttggggagtgctgtcccgtctgtgctgctgaccagccgccctccact
gatcgcttgccaggtgctaagggacaaaagggagaaccaggagatataacagatgtgacg
ggaccgaggggaccagctggtcctatgggacccccaggagaacaagggccccgaggagac
cgaggagagaagggggagaagggaagtccagggccccgtggcagagatggtgagccgggg
acccctggaaacccgggccctcctggaccccctgggccaaacggacccccaggcctcggt
gggaaccttgctgctcagatggccggagggtttgatgataaagctggaggagcacagatg
ggagtgatgcaaggacccatgggtccgatgggtcctcgaggaccaccaggccagaatgga
gctcctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggctcatcc
ggcccaataggtcctcgtggccccccgggtccctcaggaaaaccaggagatgatggagaa
gcaggcaaaccagggaaatctggtgaacgtggacctcccgggcctcagggagctcgtgga
ttcccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtctggat
ggtgctaaaggagagtccggagccactggggctaaaggtgaggcggggtctcctggagaa
agtggtgctcctggaccaatgggtccccgtggtttacctggtgaaagggggcgtccagga
ccatctggagctactggtgctcgtgggaatgatgggtcgcccggcgctgctggtcctcct
ggtcccgtaggcacggctggctctcccggtttcccaggatcccccggtgctaagggtgaa
gcaggacctaccggagccagaggacccgagggagcacaaggaccccgtggagagtctggc
gtccccggatctccaggaccttctggaatctctggtaaccccgggactgatggcctcccc
ggagccaaaggatcagggggtgctcctggtatcgctggtgcttctggttttccaggccct
cggggccctcccggccctcagggagccactggacctctggggcccaagggacagtctggt
gatccgggtctcgcagggttcaagggtgaggccggcccaaaaggagaaattggcaacgct
gggcctcaaggtgcccctggacctgctggagaggagggtaagcgaggacccagaggagag
ccgggtgctcttggacccgtcgggccgcccggagagaggggagctcctggtaatcgaggt
tttcctggacaagatggtctggctggtccaaagggtgctccgggcgagcggggagctgcg
ggggtgtcgggacccaagggagccagcggagatccgggccggcctggagaaccgggtctg
cctggtgcacggggtctgacaggacgcccgggcgatgctggtccacagggtaaagctggt
ccgtctggtgctgctggtgaagacggtcggccaggacccccgggccctcagggtgttcgg
ggtcagccgggagtcatgggcttccctggacccaagggtggcagtggtgaagctgggaag
tctggagacaagggactcgctggagctcctggattgcgtggtctgccggggaaagacggt
gagacgggtgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcaa
ggtcagcccggaccctccggcttccagggtctgcccggacccccggggccccctggtgaa
ggaggtaaacctggcgatcagggtgttccaggagaagctggggccgcaggggccaccgga
ccacgcggtgagcggggtttcccaggagagagaggaggtgtggggccccagggcctccag
gggcctcgaggtcttccaggaactccaggaactgatgggcccaagggtggcgtcggcccg
ggggggactcctggtgctcaggggcccccaggactgcaggggatgcctggagagagaggg
acatctggcattcctggaccaaagggggacagaggggacaacggtgataaaggacctgaa
ggagctcctgggaaggatggtgcaagaggtttaacaggtccaatcggtcccactggacct
gcgggacccaacggtgaaaagggagagtctggacctgcaggaccgtctggagccgctggt
actcgtggtgttcctggtgacagaggagagactggtcctcctggtcctgctggtttcgct
ggtcctcctggtgcagatggacagcctggacttaagggagaccagggtgaaggtggacag
aagggtgatgctggtgcaccgggcccccaggggtcttctggagctccaggtcctcaggga
ccaactggtgtgtctggaccgaaaggggctcgcggtgctcaaggacctcctggtgccaca
ggtttccctggagccgctggtagagttggacctcctggtcccaatggtaacccgggtcca
gcaggtgctgctggtcctcctggtaaagacggtccaaagggtgtgcgtggtgacggtggt
cctcctggaagaccaggggatgctggcctgcgtgggccggctgggactcctggagagaag
ggagatcctggagaagatgggcctcacggtccggatgggcctgcaggtcctcagggtctg
gctggtcagcgtgggattgttggacttccaggacaacgtggtgaaagaggtttccctggc
ctgcctggaccctctggtgagcctggtaaacaaggagctgctggaggacctggagaccgt
ggaccccctggacctgtgggagcgccgggtctgactggacctgctggggaacctgggaga
gagggcaatcctggatctgatggtcctcctggccgagatggttctgcaggaataaagggt
gaccgtggagacactggacccacgggtgctcctggtgctccgggtggaactggtgctcct
ggtccggtcggacccaccggcaaacagggagaccgaggagaggctggacccaaaggacct
gctggatctctggggcctgctggagctcgaggaatgcctggtccacaaggcccgcgcgga
gataagggtgaggctggggattcgggtgagagaggacagaagggacacagaggattcact
ggtcttcaaggtctgcctgggcctcctggccaacctggagaccaaggagcttctggacct
gctggacccggtggagcaagaggacccccaggccccgttggtccagctggaaaagatgga
tccaatggtttgcctggacccattggaccccctggacctcgcggccgttctggagagact
ggcccagctggccccccaggaaaccctggtccccccggtctccctggcccaccggggccc
ggcatcgatctgtctgctttcgctggtctgtctcatcctgagaagggtccggaatccctg
caatacatgagggcagaccaagccgccgaaggtaatgtccagaacgatgcagaggtggac
gccagtctgaagtctctcaacaatcagatggagaacatccgcagtcctgacggctccaag
aagagcccggcccgcacctgcagggacctgaagctctgccaccccgactggaagagcggt
gaatactggattgatcctaaccagggctgcactgttgatgctatgaaggtcttctgcaac
atggagactggcgagacctgcgtttatccaaaacctgccaatatcccacgcaagagctgg
tggacttccaaaggttcggagcgtaaacacgtttggtttggagaagccatgaatggtgga
ttccattttggctatggagacgacaacctggcacctaacacagcaagcattcagatgact
ttcctgagactgctttccacagaagcctcacagaatctgacctaccactgcaagaacagc
gtggcctacatggacgagtccaccggagacctgaagagagctctgctgctgcaggggtcc
aatgatgtgcagatcagagccgagggcaacagccgcttcacatacactgttctggaggat
ggctgcaagaaacacacaggacaatggagcaagactgtcatcgagtacaaatcccagaag
acttctcgcctgcccattgtggacatcgcaccgatggatattggaggagctcatcaggag
tttggagtggacctgggtgccgtctgtttcttgtaa
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