Carassius gibelio (silver crucian carp): 127968346
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Entry
127968346 CDS
T08819
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127968346
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
127968346
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgib04515
]
127968346
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127968346
Cell adhesion molecules [BR:
cgib04515
]
Cadherins
Protocadherins
127968346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
TM_ErbB1
FAM176
DUF4139
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
127968346
NCBI-ProteinID:
XP_052425458
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All DBs
Position
B11:complement(23540108..23544104)
Genome browser
AA seq
868 aa
AA seq
DB search
MWNTKRGSCLHSKGELWGLFILLLYTIPLSSSSNFSHLIYKIKEGLPKGTLIGAISADLK
LDLSVSPPRSFNLELKTARQQYVNLNNTSGELFTSAVEIDREALCAESHEGQGCAIFLDV
LILPQQYFQLVKVKIIIEDVNDNHPHFPVGDIRVSVPENAPVNARFAVEQSAVDPDIGIH
SVQTYWLANDYGVFTLDVEENEGGELTPFLIITESLDRETQAEYVTDIIAEDGGTPPLLG
TATLRIIITDVNDNCPKFTESLVNVTIYGNATKGMQLARLEAYDPDEGANALITYTFSER
VTQESRNLFNLDTNTGVLKLAGKIDNNTGKLYKLIVLANGPTCIPEVATVNVHVIKQLSG
PPVVIPRYIASEKDGVVSLSESEPAFTPIAFFTIKNTEPQQKIECLLEGAGPFRLVPYER
IKNEYLLETTELLDYEQQQDYEIVVVVRNSHGLVVNTIVKVHVLDVNDNAPVFKQSFIEI
TVEENNPPNTFLAQLQATDADSESRGEVYYLLGADAPTIFDLDRSTGVLTVSTSLDREEK
ETYRFMVRAVDRGTPRKESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGVLT
VTDADAGENGWVALSILNGSDIFVIDTGRGALRAKTSLDREQQGTYYVWIEAIDGGEPAL
SCITTVTVLLLDVNDNPPTVLFPQSNQSYMLVLPNTLPGTSITEVYAVDRDTGMNAVIAY
SIIKRTDGEPGSFDIDPYTGNITLRKTLSNRGLYSLWVKVRDHGQPELYSTVLVNLFVNE
TVSNETLIQSLLPRSVDIDHGELPPDKKGRKGEQVPNMCGEYRVLLLALTATCLGLFLTV
VSLVTYICCKRRKPKKKRSDIEIPLNSL
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacactaaaagaggatcctgcctgcacagcaaaggagagttatggggtttgttc
atcctcctcttgtacaccattcccctctcctcctcgtcaaatttcagtcacctcatctat
aagataaaagaaggattacctaaagggacacttataggggctatcagtgcggacttaaaa
ttggatctttctgtcagtcctcctcgttcattcaatctggagctaaagacggccagacag
cagtacgtgaatctgaataacacgtcgggggagctgttcacatctgcggtggagattgac
agagaggctctgtgcgcggagtcccacgagggccagggctgcgcaatctttctggacgtg
ctaatccttcctcaacagtactttcagctggttaaggttaaaattattattgaggatgtg
aatgacaaccacccgcatttccctgttggagatatcagggtgtctgtgccggagaacgca
cctgttaatgcaaggtttgcggtggagcaatccgcagtcgatcccgacatcgggattcac
agcgttcaaacatactggcttgctaatgactatggagttttcacattagacgtagaggag
aacgaaggcggtgaactgacaccctttctcatcattaccgagtctcttgatagagagaca
caagctgagtatgtgactgacattatagccgaggacggaggcactccgccgcttctaggc
actgcaactctgaggattatcatcacggacgtcaacgacaactgtcccaagtttacagag
tcgctagtgaacgttactatttacggaaatgctactaagggcatgcaactggctcgtcta
gaagcctacgatccagacgagggagccaacgccttgatcacttacactttcagcgaacgg
gtcactcaggaaagcagaaacctgtttaatttggatacaaacactggggttcttaaacta
gcaggaaagattgacaacaacaccggaaaactctacaaactaatcgtgctggccaatggg
ccgacttgtattccagaagttgcaacagttaacgttcacgtcatcaaacagctctccggg
cctccggtggttatcccacgttatattgcgtccgagaaggacggtgttgtgagtttaagt
gaatcagagccagcgtttacacccattgctttttttaccatcaaaaacaccgagccacaa
cagaagatagagtgtcttcttgaaggtgcaggtccgtttagacttgtaccgtatgagcgg
attaaaaacgagtacctgcttgagaccaccgaactattggattatgagcagcaacaggat
tatgaaatagttgttgtggttcgtaactctcatggattagtagttaacaccatagtgaaa
gtccacgtgttggatgttaacgacaacgctccggttttcaagcaatctttcattgaaatc
acagtggaggagaacaacccaccaaatacattcctcgctcagcttcaggccaccgatgca
gacagtgaaagtagaggcgaggtttattacctactcggtgccgacgctcctaccattttt
gacttggatcggtcaaccggagtactgacggtgtccacttcccttgaccgagaggaaaag
gagacgtatcgtttcatggtgcgagccgtagaccgtggcacgccgagaaaggagtcgatc
gccactgtgattatcactgtccaggatcggaatgacaacagtccaaggttcatcaacaag
gacttcaccttctttgtgccggagaactttccaggttttggggaaatcggcgttcttact
gtcacagatgcggatgctggggagaacggctgggtggcgttgtccatccttaatgggagc
gacatcttcgtgattgacaccggacgaggagcgctgcgggccaagacctctctggaccgg
gagcaacagggaacgtattacgtttggatagaggcaatcgatggaggcgaacctgctctt
tcttgcatcacaacggtgactgttctcctactggatgtcaacgataaccctccgactgtt
cttttccctcagtccaaccagtcgtacatgttggtgcttcccaacacgcttccgggaacg
tctataacggaggtttacgcggtggaccgggacaccggaatgaacgctgttattgcatac
agcatcatcaagagaacggatggagagccaggctcatttgacattgacccctatacggga
aacatcaccttgaggaaaaccttgagcaatcggggcctctacagtttgtgggtcaaagtc
agggaccacggacaaccagaactctactctaccgttctggtcaacctgtttgtgaatgaa
acagtcagcaatgagaccctcattcagagtttgttgcccagaagtgtagatattgaccat
ggtgagcttcctcctgataagaaagggaggaagggagaacaagtgccaaacatgtgtggc
gagtaccgagtgttactgcttgcactgacagctacctgcctgggattgtttctgaccgtt
gtgtcgttggtgacttacatctgctgcaaaagaagaaaaccgaaaaagaagagatcagac
attgagattcccttaaattctctttaa
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