Carassius gibelio (silver crucian carp): 127968471
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Entry
127968471 CDS
T08819
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127968471
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127968471
09142 Cell motility
04820 Cytoskeleton in muscle cells
127968471
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127968471
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
127968471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127968471
NCBI-ProteinID:
XP_052425692
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All DBs
Position
B11:22323519..22335488
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AA seq
683 aa
AA seq
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MAHAGALLLILLQLVLIISAQRGPVGPKGLPGPPGLPGFSGVDGIDGERGPGPGPDGPPG
LDGDNGKDGLNGLPGKPGADGLTGPRGAPGPVGPPGQKGEPGEPGQRGAIGVGEDGEAGA
DGEDGLPGELGKVGPPGSRGPRGSPGDPGLAGPRGPPGVWDGKELCPNACTSGLNGYTGL
PGMKGHKGVKGESGEPGRQGHKGEEGDQGAPGDPGAQGLPGPQGLRGITGMMGPKGDRGS
RGNVGDLGPQGIQGAPGDRGQRGKVGETGPKGAQGPLGLQGLMGLPGPKGETGLPGVDAR
DGIPGLPAVKGLPGKVGSPGEAGLQGFPGLPGIPGAKGHMGVKGNTGNPGVAGLIGNNGK
TGERGEQGEVGPVGPRGGPGERGVRGPDGAAGSPGARGAKGDPGLPGLPGPAGFIGQKGD
RGAVGLTGPKGEQGPSGEEGTPGDKGDVGDEGEPGEKGSTGKPGDTGNKGPEGGRGQPGP
EGLAGDPGPRGMQGDRGVPGLPGAQGRPGRAPADEHIKQVCMRVLHGQLAQLAASLTRPE
SGISGLPGPPGPSGPPGPAGDNGFPGHPGSRGLPGLKGPPGLIGRKGPKGDQGDRGDRGP
TAVGDKGIPGPPGLPGEPGKPAYGNNGRDGLRGPAGVPGMPGVPGPPGPAGSNGYCESSQ
CVLQAVEDPRSLKEYNMKGPEGL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgccggggctctgctgctgattttactgcagttagtcctcatcatctcagca
cagagggggccagttggtcccaaaggactacctggacctccagggcttcctgggttttct
ggtgttgacggcattgatggcgagaggggacctggccctggcccagatggccccccaggc
cttgatggggacaatgggaaggatggattaaatgggcttccaggaaaaccaggagcggat
ggtttgactggaccccgtggtgcccctggccctgttggccctcctggacaaaaaggtgaa
cctggtgagcctggacaaaggggagccattggtgttggagaggatggtgaagctggtgct
gatggggaagatgggttacctggagagctgggcaaagttggacctcctggaagtcgtgga
ccgagaggttctcctggtgatccaggtctggcaggacccagaggccctcctggagtctgg
gatggtaaggagctgtgtccaaatgcctgtacttctggcctgaatggttacacaggtctt
ccaggcatgaagggccacaaaggtgtcaaaggtgaatcaggtgaaccaggaaggcaagga
cataagggtgaagaaggagaccagggagcacctggagatccaggagcacaaggccttcct
ggtccacagggtctccgaggaatcacagggatgatgggccctaaaggagacaggggatcc
cgtggaaatgttggcgacctgggccctcagggtattcagggcgctcctggtgatcggggt
caaagaggaaaagtaggtgagactggaccaaaaggagctcagggtcctctggggttgcag
ggacttatgggtttacctggaccgaaaggagagactggtctgcctggggtggatgctcgt
gacggtattccagggctgcccgctgtgaagggtcttcctggaaaagttggctcacctggt
gaggccggacttcagggatttccaggtttgccaggcattccaggagcaaaaggtcacatg
ggtgtaaaaggaaatactggtaatccaggtgtggcaggtctgattggaaataatggaaaa
acaggggaacgtggcgagcagggagaggtgggaccagtcggaccaagaggtgggccaggt
gagagaggagtgagaggtcctgatggggctgcagggtcaccaggtgcgaggggagctaaa
ggagatccgggcctccctggtcttcccgggcctgctggcttcatcgggcagaaaggcgac
aggggggctgtgggtctaactggtccaaaaggagagcaaggaccatctggcgaagaggga
acacctggagacaaaggagatgttggtgatgagggagagccaggcgagaaaggatcgaca
ggaaaaccaggagacacaggaaataaagggccagagggtgggcgtggccaacctggaccc
gagggcctagctggagatcccggcccaagaggcatgcaaggagacagaggggttcccgga
ctgcctggggcacagggacgaccaggccgagcacccgcagatgaacacatcaagcaggtc
tgcatgagggttttgcatggacagctcgcccagttggcagccagtctgacaaggccagag
tcgggcatctctgggttgccaggtcctccaggtccctctggccctccagggcctgctgga
gacaatggcttccctgggcatcctggaagcagaggactgccgggtctcaaagggcctccg
gggctcattgggaggaaagggcccaaaggtgaccaaggtgacaggggagatagagggccc
acagcggtgggggataaaggaatacccggaccaccagggctcccaggtgagcctgggaaa
ccagcatacggcaataacgggcgtgatggtctgagaggaccagcaggtgttcctggaatg
ccaggtgttcccgggccaccaggtcccgccggctctaacggatactgcgagtcatctcag
tgcgtgcttcaagcagtcgaggatccgagaagtctcaaagaatacaacatgaagggacca
gaaggtctatga
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