KEGG   Carassius gibelio (silver crucian carp): 127968471
Entry
127968471         CDS       T08819                                 
Name
(RefSeq) collagen, type IX, alpha 1a
  KO
K08131  collagen type IX alpha
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04510  Focal adhesion
cgib04512  ECM-receptor interaction
cgib04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127968471
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127968471
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127968471
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cgib00535]
    127968471
Proteoglycans [BR:cgib00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   127968471
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 127968471
NCBI-ProteinID: XP_052425692
LinkDB
Position
B11:22323519..22335488
AA seq 683 aa
MAHAGALLLILLQLVLIISAQRGPVGPKGLPGPPGLPGFSGVDGIDGERGPGPGPDGPPG
LDGDNGKDGLNGLPGKPGADGLTGPRGAPGPVGPPGQKGEPGEPGQRGAIGVGEDGEAGA
DGEDGLPGELGKVGPPGSRGPRGSPGDPGLAGPRGPPGVWDGKELCPNACTSGLNGYTGL
PGMKGHKGVKGESGEPGRQGHKGEEGDQGAPGDPGAQGLPGPQGLRGITGMMGPKGDRGS
RGNVGDLGPQGIQGAPGDRGQRGKVGETGPKGAQGPLGLQGLMGLPGPKGETGLPGVDAR
DGIPGLPAVKGLPGKVGSPGEAGLQGFPGLPGIPGAKGHMGVKGNTGNPGVAGLIGNNGK
TGERGEQGEVGPVGPRGGPGERGVRGPDGAAGSPGARGAKGDPGLPGLPGPAGFIGQKGD
RGAVGLTGPKGEQGPSGEEGTPGDKGDVGDEGEPGEKGSTGKPGDTGNKGPEGGRGQPGP
EGLAGDPGPRGMQGDRGVPGLPGAQGRPGRAPADEHIKQVCMRVLHGQLAQLAASLTRPE
SGISGLPGPPGPSGPPGPAGDNGFPGHPGSRGLPGLKGPPGLIGRKGPKGDQGDRGDRGP
TAVGDKGIPGPPGLPGEPGKPAYGNNGRDGLRGPAGVPGMPGVPGPPGPAGSNGYCESSQ
CVLQAVEDPRSLKEYNMKGPEGL
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggcgcacgccggggctctgctgctgattttactgcagttagtcctcatcatctcagca
cagagggggccagttggtcccaaaggactacctggacctccagggcttcctgggttttct
ggtgttgacggcattgatggcgagaggggacctggccctggcccagatggccccccaggc
cttgatggggacaatgggaaggatggattaaatgggcttccaggaaaaccaggagcggat
ggtttgactggaccccgtggtgcccctggccctgttggccctcctggacaaaaaggtgaa
cctggtgagcctggacaaaggggagccattggtgttggagaggatggtgaagctggtgct
gatggggaagatgggttacctggagagctgggcaaagttggacctcctggaagtcgtgga
ccgagaggttctcctggtgatccaggtctggcaggacccagaggccctcctggagtctgg
gatggtaaggagctgtgtccaaatgcctgtacttctggcctgaatggttacacaggtctt
ccaggcatgaagggccacaaaggtgtcaaaggtgaatcaggtgaaccaggaaggcaagga
cataagggtgaagaaggagaccagggagcacctggagatccaggagcacaaggccttcct
ggtccacagggtctccgaggaatcacagggatgatgggccctaaaggagacaggggatcc
cgtggaaatgttggcgacctgggccctcagggtattcagggcgctcctggtgatcggggt
caaagaggaaaagtaggtgagactggaccaaaaggagctcagggtcctctggggttgcag
ggacttatgggtttacctggaccgaaaggagagactggtctgcctggggtggatgctcgt
gacggtattccagggctgcccgctgtgaagggtcttcctggaaaagttggctcacctggt
gaggccggacttcagggatttccaggtttgccaggcattccaggagcaaaaggtcacatg
ggtgtaaaaggaaatactggtaatccaggtgtggcaggtctgattggaaataatggaaaa
acaggggaacgtggcgagcagggagaggtgggaccagtcggaccaagaggtgggccaggt
gagagaggagtgagaggtcctgatggggctgcagggtcaccaggtgcgaggggagctaaa
ggagatccgggcctccctggtcttcccgggcctgctggcttcatcgggcagaaaggcgac
aggggggctgtgggtctaactggtccaaaaggagagcaaggaccatctggcgaagaggga
acacctggagacaaaggagatgttggtgatgagggagagccaggcgagaaaggatcgaca
ggaaaaccaggagacacaggaaataaagggccagagggtgggcgtggccaacctggaccc
gagggcctagctggagatcccggcccaagaggcatgcaaggagacagaggggttcccgga
ctgcctggggcacagggacgaccaggccgagcacccgcagatgaacacatcaagcaggtc
tgcatgagggttttgcatggacagctcgcccagttggcagccagtctgacaaggccagag
tcgggcatctctgggttgccaggtcctccaggtccctctggccctccagggcctgctgga
gacaatggcttccctgggcatcctggaagcagaggactgccgggtctcaaagggcctccg
gggctcattgggaggaaagggcccaaaggtgaccaaggtgacaggggagatagagggccc
acagcggtgggggataaaggaatacccggaccaccagggctcccaggtgagcctgggaaa
ccagcatacggcaataacgggcgtgatggtctgagaggaccagcaggtgttcctggaatg
ccaggtgttcccgggccaccaggtcccgccggctctaacggatactgcgagtcatctcag
tgcgtgcttcaagcagtcgaggatccgagaagtctcaaagaatacaacatgaagggacca
gaaggtctatga

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